Query= MSMg01no522_g14.b1 MSMg01no522_g14.b1 CHROMAT_FILE:
MSMg01no522_g14.b1 PHD_FILE: MSMg01no522_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:00 2005
(642 letters)
>mm_chr1_140978336_140979377
Length = 1042
Score = 1197 bits (619), Expect = 0.0
Identities = 634/641 (98%), Gaps = 6/641 (0%)
Strand = Plus / Plus
Query: 8 gaattcagtgcaatacttttggtattgatggagaaagaattgttttcgtcctataaacac 67
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcagtgcaatagttttggtattgatggagaaagaattgttttcgtcctataaacac 261
Query: 68 ctgcatgcagagcttaattttaaataaattggttgggatttctttctccaaatgatgcat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgcatgcagagcttaattttaaataaattggttgggatttctttctccaaatgatgcat 321
Query: 128 ttgtatacatgcatgattcacacacacacacacacaca--cac--acacacac--acaca 181
|||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct: 322 ttgtatacatgcatgattcacacacacacacacacacacgcacatacacacacatacaca 381
Query: 182 cacacacacacacaaggcaggggagagaaagatgggaggagaagagaaatcatttgttat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cacacacacacacaaggcaggggagagaaagatgggaggagaagagaaatcatttgttat 441
Query: 242 tgatggtttcctcatatctaaaagccaatattggtaaaaatcaaagttctttggaattga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgatggtttcctcatatctaaaagccaatattggtaaaaatcaaagttctttggaattga 501
Query: 302 tggtagttacttaaaatttttcaagaaaaatattatttaaaggtatttaaggattgtgat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tggtagttacttaaaatttttcaagaaaaatattatttaaaggtatttaaggattgtgat 561
Query: 362 tatttaaatagaccatctttctacacaggcatggtaggtgttgtattaagtttctgtgac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatttaaatagaccatctttctacacaggcatggtaggtgttgtattaagtttctgtgac 621
Query: 422 tagccgtcttcagaacagtgcatgtacttgtcccgactgattgcactgctgtactgtgta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tagccgtcttcagaacagtgcatgtacttgtcccgactgattgcactgctgtactgtgta 681
Query: 482 tctccagagtggaggagtagtgctgcccatgctgtgaagtaggtaggcagtgactcactc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctccagagtggaggagtagtgctgcccatgctgtgaagtaggtaggcagtgactcactc 741
Query: 542 ctgcagctctttccttggggaacttgaaaggaaaaatagttttggaaactacaggatgta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctgcagctctttccttggggaacttgaaaggaaaaatagttttggaaactacaggatgta 801
Query: 602 atttaattatattgtgaagtgtaacacacacaaatcttaag 642
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atttaattatattgtgaagtgtaacacacacaaatcttaag 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_g14.g1 MSMg01no522_g14.g1 CHROMAT_FILE:
MSMg01no522_g14.g1 PHD_FILE: MSMg01no522_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:00 2005
(654 letters)
>mm_chr1_141087025_141088080
Length = 1056
Score = 1112 bits (575), Expect = 0.0
Identities = 642/679 (94%), Gaps = 27/679 (3%)
Strand = Plus / Minus
Query: 1 tttaaaaggaaatgtctctccattcaaatgttgagggtacatctaaaaccacgaagagta 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 tttaaaaggaaatgtctctacattcaaatgttgagggtacatctaaaaccacgaagagta 984
Query: 61 ggtttaatttgaaattttttaataaaaaaaaagctgcgtctcagtctaacttaactttaa 120
|||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 983 ggtttaatttgaaaatttttaat-aaaaaaaagctgcatctcagtctaacttaactttaa 925
Query: 121 ttaaggggtttgaccttaatgaatgatttttaggttaaaatata---------------a 165
|||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 924 ttaaggggtttgaccttaatgaatgatttttaggttaaaatatagatagatatagatata 865
Query: 166 g-tatagatatagatatagatatagatatagat---------atcaatgtccccatgtga 215
| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 864 gatatagatatagatatagatatagatatagatatagacataatcaatgtccccatgtga 805
Query: 216 agccaggctcaatttttcctaaatgtatttaacattttttttcaaattcattgatattta 275
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 804 agccaggctcaatttttcctaaatgtatttgaca-tttttttcaaattcattgatattta 746
Query: 276 ctcctgtgaaagagaataatggaaaactgtcttggttggtgattagaataatatataagt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcctgtgaaagagaataatggaaaactgtcttggttggtgattagaataatatataagt 686
Query: 336 tttaattcagtgtccttccactgacaaacactaattgaataactaaatcttaaataatag 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttaattcagtgtccttccactgacaaacactaattgaataactaaatcttaaataatag 626
Query: 396 gatttaagtgtctcaaatagaatagagagagataagggtaactactttgctacttatgga 455
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 625 gatttaagtgtctcaaatagaacagagagagataagggtaactactttgctatttatgga 566
Query: 456 tatttaatctgaaaaatggagtagtcagactcactgacagaaattacaattatggtatct 515
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 tatttaatctgaaaaatggagtagtcaggctcactgacagaaattacaattatggtatct 506
Query: 516 tacttaacacatattataatcttagaaagtcattccaaactaatagtatatgaaaaagcc 575
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 tacttaacacatattataatcttagaaagtcaccccaaactaatagtatatgaaaaagcc 446
Query: 576 ataggaaatatgatgattcctaaactagcaaaaactcatttaaaatgtttaataagagtt 635
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 ataggaaatatgatgattcctaaactagaaaaaactcatttaaaatgtttaataagagtt 386
Query: 636 accctgtgtggacggataa 654
|||||||||||||||||||
Sbjct: 385 accctgtgtggacggataa 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 10
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1056
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1046
Effective search space: 673624
Effective search space used: 673624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
