Query= MSMg01no522_l12.b1 MSMg01no522_l12.b1 CHROMAT_FILE:
MSMg01no522_l12.b1 PHD_FILE: MSMg01no522_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:24 2005
(614 letters)
>mm_chr1_165525763_165526776
Length = 1014
Score = 1029 bits (532), Expect = 0.0
Identities = 556/564 (98%)
Strand = Plus / Minus
Query: 5 gaattccatctttatgcaggcataaaacaaggcagaggataagaggctacaaagagatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattccatctttatgcaggcataaaacaaggcagaggataagaggctacaaagagatca 505
Query: 65 gctgacaaggttaagttaccatgtggaacactgtccttggaacacaacagataccatcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctgacaaggttaagttaccatgtggaacactgtccttggaacacaacagataccatcct 445
Query: 125 cagagcagccaagggacagtcaagtgcaggctccctggtgttcacccatgggaggagaaa 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagagcagtcaagggacagtcaagtgcaggctccctggtgttcacccatgggaggagaaa 385
Query: 185 gtcaggaggatcattagcatcttgcctgcctgtgattttaaccatttcttcctgtgcctt 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 gtcaggaggatcattagcatcttgcctgcctgtgattttaaccattccttcctgtgcctt 325
Query: 245 ctcatgagctgtgactagtgctgcccccaatgcacatgaccttggagagagccagagaat 304
||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct: 324 ctcatgagctgtggctagtgctgtccccaatgcacatggccttggagagagcaagagaat 265
Query: 305 acagacaaagtggaagcatacatgtcagaggaagccatctatgtagctgtgggaaagtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acagacaaagtggaagcatacatgtcagaggaagccatctatgtagctgtgggaaagtct 205
Query: 365 tcatctgtgcagagatgtcaatgatgctgctgtttggtggacacccatgctcctgtaagt 424
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 204 tcatctgtgcagagatgtcaatgatgcttctgttaggtggacacccatgctcctgtaagt 145
Query: 425 aacctgcacctatgctaagcccaacagactcactggctcaccaagctgggcctggttgaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aacctgcacctatgctaagcccaacagactcactggctcaccaagctgggcctggttgaa 85
Query: 485 tccttactttggttgctgtctgataccccatctggggtgaacagacatttgatttcccaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tccttactttggttgctgtctgataccccatctggggtgaacagacatttgatttcccaa 25
Query: 545 ggaaaaggtcatatgctagttact 568
||||||||||||||||||||||||
Sbjct: 24 ggaaaaggtcatatgctagttact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_l12.g1 MSMg01no522_l12.g1 CHROMAT_FILE:
MSMg01no522_l12.g1 PHD_FILE: MSMg01no522_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:24 2005
(557 letters)
>mm_chr1_165441346_165442303
Length = 958
Score = 1048 bits (542), Expect = 0.0
Identities = 554/558 (99%), Gaps = 1/558 (0%)
Strand = Plus / Plus
Query: 1 ctgtggtgcatgggatgtcttgaagaaacaagttgtatcctgtgtgagatagaaattaca 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtggtgcatgggatgtcttgaacaaacaagttgtatcctgtgtgagatagaaattaca 260
Query: 61 tttttttt-gtgggttaaatagtttgagatgtttgagttttagtgagggagagtacggac 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttttgtgggttaaatagtttgagatgtttgagttttagtgagggagagtacggac 320
Query: 120 atggagaggcaagaatagatgcttctttgaaatcaatgttcttgactatgaaataatttc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggagaggcaagaatagatgcttctttgaaatcaatgttcttgactatgaaataatttc 380
Query: 180 acaggaccggaatgctagttgccatttatatgataatatatgaatatagttgtaaatcat 239
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 acaggaccggaatggtagttgccatttatatgataatatataaatatagttgtaaatcat 440
Query: 240 tttactgagcaaagtctcagttaattttctaagagcccaaatatcaatgagaaccaggta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttactgagcaaagtctcagttaattttctaagagcccaaatatcaatgagaaccaggta 500
Query: 300 ggacctgtatactgggcaatacccaaccagaagggagtgtgctgtgagcctggtgtcctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacctgtatactgggcaatacccaaccagaagggagtgtgctgtgagcctggtgtcctg 560
Query: 360 agagaggaagttattggcttgactgaagacagccttagtaatgaaacaattgagaataga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagaggaagttattggcttgactgaagacagccttagtaatgaaacaattgagaataga 620
Query: 420 tttttaaagcatcccgttgaattcctatgatgcataggctgtcttgaagaagcaagttgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttaaagcatcccgttgaattcctatgatgcataggctgtcttgaagaagcaagttgt 680
Query: 480 tccaagggcaatggctgagacaagaggcacggcttctctaagagtcattggttttcctta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccaagggcaatggctgagacaagaggcacggcttctctaagagtcattggttttcctta 740
Query: 540 tactgatttcctaagacc 557
||||||||||||||||||
Sbjct: 741 tactgatttcctaagacc 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
