BAC Information

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BAC

Clone NameMSMg01-522N23
Chromosome1 (Build37)
Map Location 172,001,139 - 172,001,691
singlet/doubletsinglet
Overlap geneDdr2
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7
Downstream geneLOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522N23.T7 (MSMg01no522_n23.b1)MSMg01-522N23.TJ (MSMg01no522_n23.g1)
ACCAG593327AG593328
length753762
length of high quality
(start - end)		553 (86 - 638)560 (85 - 644)
definitionCHROMAT_FILE: MSMg01no522_n23.b1 PHD_FILE: MSMg01no522_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:36 2005CHROMAT_FILE: MSMg01no522_n23.g1 PHD_FILE: MSMg01no522_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTGTGACCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCGTACCA
CCCGCGGATTCTCACTGCTATTTCCTTACCAAATAAAAATCACCTCTGTG
CAGCGCCCTGCAGTCGTTGACCTTTAGACTAGTAAGTAGTAGAAGCAGAG
CTTAAACTCTAACCTATATTTATATGTTATATATTAAAGCCTATATTATA
AATTATGTGTTCATAAGAACTGATAACTTATGGAAACATCACAGAAGTTC
CTCAAAAAACTAAAACCAGAACTACCACATGATTGAGCTATCTATCCCTC
TACTGGGTACCTATACAAAGAAAACAAAACTTAAAAAAGGAAACCAGTGT
GTTCAGACACTATACACCCTCCAATGGATTGCACCCCAAAGGCTAAGAAA
TGGAGCCCCAATGTCCACTGATGAAAAGATGGATAAAGAAAATGTAGGAC
ATACATGCAATAAAATACTCTTCCATGATAGGGATGGAACCCTGTTATTC
AAGGTAGCCTAGCTAGAACTGGAAGACATTAATAAAAAGAAGTCAGGCAC
AAAGACTGCACTTTCCCCTTCCTGGGTGGAAGCTTTAAATAAGGAGTTTG
TTGTAGAGTTTAAAAGGGGTCACTGGAGGCTGAGAAGGGCAGAGTTACGA
ATGGGGTCAATGGGTACACATGAAGACACTGTAGAAGATGAAACAGGCCC
ACTTGTTTCCCTTGGAACTTGCTGAAAAAAATGGTGCATTCAGCTTCATG
AGG

CTTTTTNAACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGGCCCCAGATCT
TCCACAGATGTACACTGGAGGAAACGGTTCTGGGCTCTTAGTGTATTCCT
CAAAAAGCCCTGTGGTGTTCTTTGATTGATTCCCTTGGCAAGGGAGACAG
ATACAGACTAATGCTCTGTATACATGTTTGGAATGTGTATTGATTGAACT
TGTGCAATGCAAGTCTAGATTTCTTTTTGTTGCATTTCTTCTTTCTCTCC
TAGGGAAAATTAATGCATAATTGCATGCTCTGTCAGTTGCTGGCATCACT
AACCACCAGATGCAATGTCTCCTTATGCTCACAGTTCTGGGGACACACTG
TGAGTCCTCTACCCCAGGCTGTGCCTTGCTCATGTGTAGCTGAGACAGGA
AATCACAAGCTGGAGATGATGACACTTTCTGTACTGAGTGCTTTTCCCCC
TTATCCTCCTGTTAGCTCAAACGTGTGCAGAGATGGTATGGCTAGACTTC
TGGCTTGGCTGATCAGCAGGGATAATGCCTTTGAATAGCCTAAGCAAAAG
TATTAGAAGATAGAGCTTGTTACAGTTTAAATATGCTTGCCCAGGGAGTG
GCACTATTAGAAGATGTGGCCTTGTTGGAGTATGTATGTCCCTCTTGGAG
TAGTGTGTCACCATGGGTGTGGGTTTTTAAGACCTCATCCTAGCTACCTG
GAAGCCAGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_n23.b1 MSMg01no522_n23.b1 CHROMAT_FILE:
MSMg01no522_n23.b1 PHD_FILE: MSMg01no522_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:36 2005
         (553 letters)



>mm_chr1_172000939_172001891
          Length = 953

 Score = 1054 bits (545), Expect = 0.0
 Identities = 551/553 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatcacctctgtgcagcgccctgcagtcgttgacctttagactagtaagtagtagaag 60
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aaaatcacctctgtgtagcgccctgcagtcgttgacctttagactagtaagtagcagaag 260

                                                                       
Query: 61  cagagcttaaactctaacctatatttatatgttatatattaaagcctatattataaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagcttaaactctaacctatatttatatgttatatattaaagcctatattataaatta 320

                                                                       
Query: 121 tgtgttcataagaactgataacttatggaaacatcacagaagttcctcaaaaaactaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgttcataagaactgataacttatggaaacatcacagaagttcctcaaaaaactaaaa 380

                                                                       
Query: 181 ccagaactaccacatgattgagctatctatccctctactgggtacctatacaaagaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaactaccacatgattgagctatctatccctctactgggtacctatacaaagaaaac 440

                                                                       
Query: 241 aaaacttaaaaaaggaaaccagtgtgttcagacactatacaccctccaatggattgcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacttaaaaaaggaaaccagtgtgttcagacactatacaccctccaatggattgcacc 500

                                                                       
Query: 301 ccaaaggctaagaaatggagccccaatgtccactgatgaaaagatggataaagaaaatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaaggctaagaaatggagccccaatgtccactgatgaaaagatggataaagaaaatgt 560

                                                                       
Query: 361 aggacatacatgcaataaaatactcttccatgatagggatggaaccctgttattcaaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggacatacatgcaataaaatactcttccatgatagggatggaaccctgttattcaaggt 620

                                                                       
Query: 421 agcctagctagaactggaagacattaataaaaagaagtcaggcacaaagactgcactttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcctagctagaactggaagacattaataaaaagaagtcaggcacaaagactgcactttc 680

                                                                       
Query: 481 cccttcctgggtggaagctttaaataaggagtttgttgtagagtttaaaaggggtcactg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccttcctgggtggaagctttaaataaggagtttgttgtagagtttaaaaggggtcactg 740

                        
Query: 541 gaggctgagaagg 553
           |||||||||||||
Sbjct: 741 gaggctgagaagg 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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