BAC Information

Click to search

BAC

Clone NameMSMg01-522O12
Chromosome1 (Build37)
Map Location 87,353,980 - 87,354,430
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522O12.T7 (MSMg01no522_o12.b1)MSMg01-522O12.TJ (MSMg01no522_o12.g1)
ACCAG593353AG593354
length741741
length of high quality
(start - end)
472 (50 - 521)451 (83 - 533)
definitionCHROMAT_FILE: MSMg01no522_o12.b1 PHD_FILE: MSMg01no522_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:38 2005CHROMAT_FILE: MSMg01no522_o12.g1 PHD_FILE: MSMg01no522_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCACACATTAGACCCTCGATGCACCTACGGAGTGGTCAGA
TGATAGGTTGGTGGGGACCATCACAGTGCCAGGTGTTCTCTTTAAAGGGC
ATAGATGAGGGAGCCACATGCTTTCTCAGACTGGTATCTTTGGTTTGGTT
TTTCTGACATGATTTTAATTTGCTTATAGGAATCTACATACAGTCCCAGT
TCACTCTAACAAGTTTATAGAGAGGACCTTCTCTATACCCAGGAGTAAGT
AATTTATCATCTGTGTTGTGTAGTCAGGGTTAAGCAGATGGTGCTGTTCA
TATTTCCAGCCAGGCACAGAGTCATCTTACATCTGCAAACAGAATCTAAA
GCTTCTTGTAAAAGAAGTCTCTCAGCCCGGCAGTGATGTGAACACCTTTA
ATCCCAGCACAGGTGGGTCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG
CAAGTTCCAGGACAGCTAAGGCCACATAAAGAAACCCTGTCTTAAAAAAT
CCAAACATACCAAAACCCAAAACCTACCTCTAACCCTCCAGAAGGCAAGA
CACAAATCTGAAAACAACAACAACCATGACAACAGAAACCCCTAACAACT
TTATGAACAAACCAGGACCCAGGAGCTATTTGACTCTATTTGCTTATGTA
TCAAAAGAAGGGCCTATTCGGCCATCCAATGGAAAAAACGG
NTTTTACAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTG
GCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA
AAGGCATGTGCCACCAAGCCCGGCTCAAGTTTTTAAAGGAAACTCCATGC
TTCTTTCTATATTCTCACACATTTTACAATGCTACTAACAATGGACCAAT
GCTCCATTTTCTCTAAAACTTTGCCAACATGTTGTCTTCTATTTGGTTGG
TTGGTTTTGGTAGTAGTCAACCTGATGGATATAATGTGATATCTTTGTGT
CTAGTCACTCTCCAATAACACAAAGTCTTTTGGTCATTTTCACCTCTAAA
GAACAATCTCAGGGGGTGGCACATGTTCCCCTGAGCTACATTGTCTAGCT
CTGGACTCACTCTTCGGTCCAGAGGAGTCTTGTGGGAAACCAAGAGAATC
CTACTTCCCCGTGGAAACCTTCAAGAACCCCAAAACTTGGAACCCTGCCC
AACCAATCCCATTCCAGTAAGAGTTGCCCACTATCCCAATTTGATCCATC
TGGGACAGCCTACAGAGGTGAGTTGTGCGCATCTATCCTTCTACAAAAAA
CCCTGGATATCCTAATGAAACTGAATTACAAGAAGAGGATTTTAAATTCT
ATCTTATGAAAGCTAATAAAAAGCCTTTTAAAAAAAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_o12.g1 MSMg01no522_o12.g1 CHROMAT_FILE:
MSMg01no522_o12.g1 PHD_FILE: MSMg01no522_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:39 2005
         (451 letters)



>mm_chr1_87353780_87354630
          Length = 851

 Score =  810 bits (419), Expect = 0.0
 Identities = 443/451 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctggccttgaactcagaaatccgcctgcctctgcctcccaagtgc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctggccttgaactcagaaatctgcctgcctctgcctcccaagtgc 260

                                                                       
Query: 61  tgggattaaaggcatgtgccaccaagcccggctcaagtttttaaaggaaactccatgctt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcatgtgccaccatgcccggctcaagtttttaaaggaaactccatgctt 320

                                                                       
Query: 121 ctttctatattctcacacattttacaatgctactaacaatggaccaatgctccattttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttctatattctcacacattttacaatgctactaacaatggaccaatgctccattttct 380

                                                                       
Query: 181 ctaaaactttgccaacatgttgtcttctatttggttggttggttttggtagtagtcaacc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaaactttgccaacatgttatcttctatttggttggttggttttggtagtagtcaacc 440

                                                                       
Query: 241 tgatggatataatgtgatatctttgtgtctagtcactctccaataacacaaagtcttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatggatataatgtgatatctttgtgtctagtcactctccaataacacaaagtcttttg 500

                                                                       
Query: 301 gtcattttcacctctaaagaacaatctcagggggtggcacatgttcccctgagctacatt 360
           ||| |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 501 gtcgttttcatctctaaagaacaatctcagggtgtggcacatggtcccctgagctacatt 560

                                                                       
Query: 361 gtctagctctggactcactcttcggtccagaggagtcttgtgggaaaccaagagaatcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctagctctggactcactcttcggtccagaggagtcttgtgggaaaccaagagaatcct 620

                                          
Query: 421 acttccccgtggaaaccttcaagaaccccaa 451
           |||||||||||||||||||||||||| ||||
Sbjct: 621 acttccccgtggaaaccttcaagaactccaa 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)