BAC Information

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BAC

Clone NameMSMg01-523O03
Chromosome1 (Build37)
Map Location 80,809,502 - 80,865,763
singlet/doubletdoublet
Overlap genenone
Upstream geneSerpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523O03.T7 (MSMg01no523_o03.b1)MSMg01-523O03.TJ (MSMg01no523_o03.g1)
ACCAG594092AG594093
length747745
length of high quality
(start - end)		633 (48 - 680)666 (80 - 745)
definitionCHROMAT_FILE: MSMg01no523_o03.b1 PHD_FILE: MSMg01no523_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:57 2005CHROMAT_FILE: MSMg01no523_o03.g1 PHD_FILE: MSMg01no523_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(80,865,135 - 80,865,763)(80,809,502 - 80,810,166)
sequence
TGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATAAGATATGGGTCTTTGAGCATGCCTATGAGAGATTTTCTT
CCTGGGTGAATTGATGTTGGCAGACTAACCCTGGAAGTCAACAGTACCAG
TTCATGAGTTGGGCCCTGAACAGAATGAGAAGGGGTGAAAGAATTCAGCA
GCATGCATTCAGCTGTTCTCTTCCAACAGCTGACACAGTTCATCCAGATG
CTTCAAGTGCCTGCTGCCTTGGCGTTCCACCATGGTAGGCTGGACAGTGA
ATCATGAGCTAAAGCAGGTTGTTTTCCTTAGAGTATTTTGCTGTAGCAAC
AAAAAGTAAACAAAGATATGCTATTGAAAAGATTCAATAGTAAGAGGACC
CAAGACTATATGCATGCTGCTCCAAACCAAAGATGGCTTGCTTCGCATTT
TCCCTGGGAATCATCTTAGTTAGTGTTCTACTGTTCTAAAGAGACCCCAT
GACCAAGGCATGGAGGTTTAATCTGGGGGGTTACTTACAGTTTAGGCTGG
TTAGGTCATTATTGTCATGGAGGGAAGCACACAAGTGGAACCATAGCTAA
GAACTTTATATTCTGCTCCACAGGCAAAGAGAGACAGAAACAGAAAAGAT
AGAGTGAGGAGAGAAAAACAGAGAGACAGACAGACAGACAGACAGACAGA
CAGACAGACAGACAGACAGACACAGAGACAGACAGTGAAAGAGACAC

NATGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGTTCAGTTCACAATGAG
ACTACTAGTAAGCACCACTAGAAAGGCTTAAAATTGTTTCTCAGACCAAA
ACAGTTAATTTATGACAGAATATGAAGACTAGAAGTCAGTTTTGACACCG
AGTTTTGCTTATTTCAGTTCACTAGGCTACTTACTATCTGAATGCCAGAC
ATTTTTGGCTTCATGTCAAGAATTTATAATAGCTTTTACTAGAGTTTTGC
AAGTTATATTCCTTAAACTGTACCCGGTTCTATGGCCTAATTAACCTTTA
GCAATACTGCAGTTCTCAGGTTATAGAGGAAATCTTCATGTATCAGGGAT
CAAGTAGGATGGGCTTTTAAAGGTCAGAGCATTATCATGAGTGCGGAGAT
TGTGACTTGATGACTAGGAAGTGAAGGAGCCAAGAGCAATCTCAAAGAAG
CCAGATTCAAACTCATGTTTATTCATACGTCTTAACATTGACTTTGGTAA
ATATGTGTCTGCAGGATTTTCAAATTAGTGACTATTAGTTGGGGGGAGTA
TTTCAAAAACAATTAAAATTTAAATATTATTTAAAAATATGTAGAAAGTT
CCAGTCAAGTACCTTGGCAATTAAGGTGATTATCTAAGCCATAATCAGTA
TTACCTCATGAATATTTCCTGAAAGAACAGAATTGAAAATGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_o03.b1 MSMg01no523_o03.b1 CHROMAT_FILE:
MSMg01no523_o03.b1 PHD_FILE: MSMg01no523_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:57 2005
         (633 letters)



>mm_chr1_80864886_80865918
          Length = 1033

 Score = 1193 bits (617), Expect = 0.0
 Identities = 626/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataagatatgggtctttgagcatgcctatgagagattttcttcctgggtgaat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gaattccataagaaatgggtctttgagcatgcctatgagagattttcttcctgggtgaat 819

                                                                       
Query: 65  tgatgttggcagactaaccctggaagtcaacagtaccagttcatgagttgggccctgaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tgatgttggcagactaaccctggaagtcaacagtaccagttcatgagttgggccctgaac 759

                                                                       
Query: 125 agaatgagaaggggtgaaagaattcagcagcatgcattcagctgttctcttccaacagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 agaatgagaaggggtgaaagaattcagcagcatgcattcagctgttctcttccaacagct 699

                                                                       
Query: 185 gacacagttcatccagatgcttcaagtgcctgctgccttggcgttccaccatggtaggct 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 698 gacacagttcatccagatgcttcaagtgcctgctgccttggctttccaccatggtaggct 639

                                                                       
Query: 245 ggacagtgaatcatgagctaaagcaggttgttttccttagagtattttgctgtagcaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggacagtgaatcatgagctaaagcaggttgttttccttagagtattttgctgtagcaaca 579

                                                                       
Query: 305 aaaagtaaacaaagatatgctattgaaaagattcaatagtaagaggacccaagactatat 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aaaagtaaacaaagatatgttattgaaaagattcaatagtaagaggacccaagactatat 519

                                                                       
Query: 365 gcatgctgctccaaaccaaagatggcttgcttcgcattttccctgggaatcatcttagtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gcatgctgctccaaaccaaagatggcttgcttcgcattttccctgggaatcatcttagtt 459

                                                                       
Query: 425 agtgttctactgttctaaagagaccccatgaccaaggcatggaggtttaatctggggggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agtgttctactgttctaaagagaccccatgaccaaggcatggaggtttaatctggggggt 399

                                                                       
Query: 485 tacttacagtttaggctggttaggtcattattgtcatggagggaagcacacaagtggaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tacttacagtttaggctggttaggtcattattgtcatggagggaagcacacaagtggaac 339

                                                                       
Query: 545 catagctaagaactttatattctgctccacaggcaaagagagacagaaacagaaaagata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 catagctaagaactttatattctgctccacaggcaaagagagacagaaacagaaaagata 279

                                        
Query: 605 gagtgaggagagaaaaacagagagacaga 633
           |||||||||||||||||||||||||||||
Sbjct: 278 gagtgaggagagaaaaacagagagacaga 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_o03.g1 MSMg01no523_o03.g1 CHROMAT_FILE:
MSMg01no523_o03.g1 PHD_FILE: MSMg01no523_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:57 2005
         (666 letters)



>mm_chr1_80809302_80810367
          Length = 1066

 Score = 1278 bits (661), Expect = 0.0
 Identities = 664/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggttcagttcacaatgagactactagtaagcaccactagaaaggcttaaaattgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggttcagttcacaatgagactactagtaagcaccactagaaaggcttaaaattgttt 260

                                                                       
Query: 61  ctcagaccaaaacagttaatttatgacagaatatgaagactagaagtcagttttgacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagaccaaaacagttaatttatgacagaatatgaagactagaagtcagttttgacacc 320

                                                                       
Query: 121 gagttttgcttatttcagttcactaggctacttactatctgaatgccagacatttttggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttttgcttatttcagttcactaggctacttactatctgaatgccagacatttttggc 380

                                                                       
Query: 181 ttcatgtcaagaatttataatagcttttactagagttttgcaagttatattccttaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgtcaagaatttataatagcttttactagagttttgcaagttatattccttaaact 440

                                                                       
Query: 241 gtacccggttctatggcctaattaacctttagcaatactgcagttctcaggttatagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacccggttctatggcctaattaacctttagcaatactgcagttctcaggttatagagg 500

                                                                       
Query: 301 aaatcttcatgtatcagggatcaagtaggatgggcttttaaaggtcagagcattatcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcttcatgtatcagggatcaagtaggatgggcttttaaaggtcagagcattatcatg 560

                                                                       
Query: 361 agtgcggagattgtgacttgatgactaggaagtgaaggagccaagagcaatctcaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgcggagattgtgacttgatgactaggaagtgaaggagccaagagcaatctcaaagaa 620

                                                                       
Query: 421 gccagattcaaactcatgtttattcatacgtcttaacattgactttggtaaatatgtgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccagattcaaactcatgtttattcatacgtcttaacattgactttggtaaatatgtgtc 680

                                                                       
Query: 481 tgcaggattttcaaattagtgactattagttggggggagtatttcaaaaacaattaaaat 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 tgcaggattttcaaattagtgactatcagttggggggagtatttcaaaaacaattaaaat 740

                                                                       
Query: 541 ttaaatattatttaaaaatatgtagaaagttccagtcaagtaccttggcaattaaggtga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaatattatttaaaaatatgtagaaagttccagtcaagtaccttggcaattaaggtga 800

                                                                       
Query: 601 ttatctaagccataatcagtattacctcatgaatatttcctgaaagaacagaattgaaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttatctaagccataatcagtattacctcatgaatatttcctgaaagaacagaattgaaaa 860

                
Query: 661 tgtcc 665
           |||||
Sbjct: 861 tgtcc 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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