GGGCCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACCATTGCCTTGAACTTCAGTCATTTTTAATTTATACCCA
GAGGGCAAATCTGGTAACAGCACCTTAGTTAAAGGGGAGAGATCATGAGA
AACACAACAGAAATGCCAACTTAAAAGCCTAGCTTAGCTTAATCCAACCA
AGCAGGACCAGAATCCAGAGATACCAACTAGCAGTGCTACTTTTACCACA
AGATGTGTTGGTTATAAAGCTTTTCTAACATTTCTTCCCCTATGCCATCC
ATATGATAACCCATGAAAGGATATTTTTGTTAAATGAAGAAAATATTTTT
TAAAGAACAAAGCACTTTTGAATTAAAAAAAAATTCCTCTCATAAAATCC
TAAGGCATTAATTTTCATGGAAGTTAAAATAAAAGGTGCACAAGCAAGTG
AAAATTAAAACATTCACATACGCATTGAAAAATAGTTCTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTCTATAAAACTGGTGTCAGTGGTTTCTA
TTTCCACTACTTAGACAGATAACAAACATCCATACCAAGCACACATATTT
GGAAGAGCAAGTTAGAGACGATAATTGCTTGGAGATAATGCTCACTGATT
TCTGGTATCTCTGTACCTCTTACTAAGGCAAGGACTCTAACAGTTGCCTT
TGTCCCAGGCTATCTCTTCATGGGTATCTGAAAAGCCAGCACCTGTACN

NACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTGGATAAACTAATTTATA
TTCGTATCAACAGTATATAAGAGTTCACCCTTCCCCCACATCCTGGCTAG
AATTTGCTGCTGGGTTGTTGTTATTGTTATTTAATAACTTGGAGGAGATC
GAATTTTCATGTAGTTAATTTGCATTTTCCTGACTATTAAAGTTGTTTAA
CATTCTTCATGTTTTTTTTTTAATTCTTTGGGAATTGTGTACAATGTATT
TTCAACATATTCACCTCCCCTCTCCCAAGCCCACCCTACTCACCCAACTT
TTTGTCTGCTGTTTTTAAAAACCCAACAAACCCAATCTGTGCTACCTGTA
TATTGAGTTTATGGCCATCCACTGGAACATGGTCAACCTGCCAGGAACCA
CTCCCTCAGAGAAGTCTGACTCTCCCTCTCTCATAGCTCTTCAGTTAGGG
GTAGGATTCTAGTGCCCACATCCCTTCTCCATGTTGGTTTCTCTAAGTTG
AACTTGCCCGGGCCTTGTGTATGCCAATCGCAACAGCTGGGTTCATATGT
GTGGCTGCTGTTGTGCCTAGACAAATATTTCATTCTAGTCACCCACTGCT
TCTGGCACTTAGCATATGCCTGTCCTCTCTTCTGCAATGGTCCCTTGAGT
GTTTATGGTCATCTTTTGAGATGAGATTGCTCCTGACCACGCAA

Query= MSMg01no523_p11.b1 MSMg01no523_p11.b1 CHROMAT_FILE:
MSMg01no523_p11.b1 PHD_FILE: MSMg01no523_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:04 2005
         (659 letters)



>mm_chr1_24092094_24093152
          Length = 1059

 Score = 1168 bits (604), Expect = 0.0
 Identities = 644/658 (97%), Gaps = 5/658 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaccattgccttgaacttcagtcatttttaatttatacccagagggcaaatctg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctaccattgc-ttgaacttcagtcatttttaatttatacccagagggcaaatctg 262

                                                                       
Query: 65  gtaacagcaccttagttaaa--ggggagagatcatgagaaacacaacagaaatgccaact 122
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtaacagcaccttagttaaaagggggagagatcatgagaaacacaacagaaatgccaact 322

                                                                       
Query: 123 taaaagcctagcttagcttaatccaaccaagcaggaccagaatccagagataccaactag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 323 taaaagcctagcttagcttaatccaaccaagcaggaccagaatccagagataccaaccag 382

                                                                       
Query: 183 cagtgctacttttaccacaagatgtgttggttataaagcttttctaacatttcttcccct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagtgctacttttaccacaagatgtgttggttataaagcttttctaacatttcttcccct 442

                                                                       
Query: 243 atgccatccatatgataacccatgaaaggatatttttgttaaatgaagaaaatatttttt 302
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 atgccatccatatgataacccatgaatggatatttttgttaaatgaagaaaatatttttt 502

                                                                       
Query: 303 aaagaacaaagcacttttgaattaaaaaaaaattcctctcataaaatcctaaggcattaa 362
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 aaagaacaaagcacttttgaattaaaaaaaaattcctctcataaaaacctaaggcattaa 562

                                                                       
Query: 363 ttttcatggaagttaaaataaaaggtgcacaagcaagtgaaaattaaaacattcacatac 422
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 563 ttttcatggaagttaaaataaaaggtgcacaaacaagtgaaaattaaaacattcacatac 622

                                                                       
Query: 423 gcattgaaaaatagttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctataaaa 482
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 623 gcattgaaaaatagttccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaaa 682

                                                                       
Query: 483 ctggtgtcagtggtttctatttccactacttagacagataacaaacatccataccaagca 542
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 683 ctggtgtcagtggtttctattttcactacttagacagataacaaacatccataccaag-a 741

                                                                       
Query: 543 -cacatatttggaagagcaagttagagacgataattgcttggagataatgctcactgatt 601
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 gcacatatttggaagagcaagttagagacgacaattgcttggagataatgctcactgatt 801

                                                                     
Query: 602 tctggtatctctgtacctcttactaaggcaaggactctaacagttgcctttgtcccag 659
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tctggtatctctgcacctcttactaaggcaaggactctaacagttgcctttgtcccag 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)