XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGGCTCCTATAATGAGATTCAGGGTGCCAGGCTTACATAGCAAGCCCCA
TTACTCGAGGAGCCAACTCTTGATCCCACCACACATCTCTGGCGCACAAA
AACTACTGCTTGCTTTAAGAAATGAGCTCTGGAATCTTCTGTTTCTCCCC
CACAGTCTCTCTCCTCCCTTTCCCCTCCCTCTGTCGTCGTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTCTCCTCCT
CCTCCTCTTCTTCTTCTTCTCCTCCTCCTCCTCTTCCTCCCTCTCCTCCT
CCTCCCTCTCCTTTTCCTCCTCCTCCCTCTCCTCTTCCTCCTCCTCCCTT
TCCTCTTCCTCCCTCTTCCTCCACTCTCTTCCTCCTCCTCTTCCTCCTTT
TCTTCTTTATTCTTTTATTTTTATTTAAACAGCCCAGGTTCTGCAAATCA
CTGGGGGTGCTCTTCTATGTTCCATGCCTTCATGGAACACGGATAGTCTC
CCAGCCCCCAGTAACAGAGAGCACCTCACTGCTTTGCAAATTCCAGTCCT
TCCGGTTGGTTTCTCTTAGTCAGCAATATAACTGCCACTGTGTGGTCCCA
CACCACCACCACCTCTTTCTCATAGTCACCCAGAAGAAATC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGATATCTGCTTGCTATAAGTAAAGACAATAAGCT
AGCTGGGTGGGATCCCCACCACTCCTGGGCTTCAACTAGCTCTGTCCCAG
GCTAACCTTGAATTCACGAATCTGCCTGAGTAGTCCAAACAATAAACTTA
GCTGGTGGGATCTTGCCATGAAATCACCACTCTCTAAGTCTAGTTATTTC
CTTCCTTAATATCTTTCTGATAAGGTGGCTCACACTGCAGCAGCCTCTGT
TTTTTAGGTCCATGAAGCTCCCTTCATGTAATTCATATTGCATCCTTATA
TTTTGCATATTTGAGAATATATTGAACTCATGTTGCCAAACTCATTCTAT
GAGACAGTTTTATTCATATCCTTCACCTGTTTGACTATATTTTCTTGTAT
TTCTTTATGTTTATTTGCTTCCTCTTTTAATGCTTTTGCTTGCTTGAATG
TATTTTCATGTATTTCCTTAAGGAATTTATTCATGTCTTCTTTAAAGGCT
TTTATTAGCTTCATTAGATTGAATTTAAAATCCTCTTCTTGTGCTTCAGT
TTCATTAGGATATCCAGGGTTTGTTGTAGAAGGATAGCTGCGCACAACTC
ACCTCTGTAGGCTGTCCCAGAGGGATCAATTGGGATAGTGGGCAACTCTT
ACTGGAATGGAATTGGTTGGGCAGGGTTCCAAGTTTTGGGGTTCTN

Query= MSMg01no524_a02.b1 MSMg01no524_a02.b1 CHROMAT_FILE:
MSMg01no524_a02.b1 PHD_FILE: MSMg01no524_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:08 2005
         (571 letters)



>mm_chr1_85282515_85283485
          Length = 971

 Score =  866 bits (448), Expect = 0.0
 Identities = 525/570 (92%), Gaps = 37/570 (6%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggctcctataatgagattcagggtgccaggcttacatagcaagccccattac 63
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggctcctagaatgagattcagtgtgccaggcttacatagcaagccccattac 263

                                                                       
Query: 64  tcgaggagccaactcttgatcccaccacacatctctggcgcacaaaaactactgcttgct 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 tcgaggagccaactcttgatcccaccacacatctatggcgcacaaaaactactgcttgct 323

                                                                       
Query: 124 ttaagaaatgagctctggaatcttctgtttctcccccacagtctctctcctccctttccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaagaaatgagctctggaatcttctgtttctcccccacagtctctctcctccctttccc 383

                                                                       
Query: 184 ctccctctgtcgtcgtcttcttcttcttcttcttcttcttcttcttcttcttcttcttct 243
           |||||||||| |||         |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctccctctgtagtc---------ttcttcttcttcttcttcttcttcttcttcttcttct 434

                                                                       
Query: 244 tcttcttcttcttcttcttcttcttcttcttcttcttcctcttcctcttcctcttcttct 303
           ||||||||||||||||||||||||||||||||||||||||||||         |||||||
Sbjct: 435 tcttcttcttcttcttcttcttcttcttcttcttcttcctcttc---------ttcttct 485

                                                                       
Query: 304 cctcctcctcctcttcttcttcttctcctcctcctcctcttcctccctctcctcctcctc 363
           ||||||||||||||||        ||||  ||| |||||||||||||||||||| |||||
Sbjct: 486 cctcctcctcctcttc--------ctcc--ctc-tcctcttcctccctctcctcttcctc 534

                                                                       
Query: 364 cctctccttttcctcctcctccctctcctcttcctcctcctccc--tttcctcttcctcc 421
           ||||||||    ||  ||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 535 cctctcct----ct--tcctccctctcctcttcctcctcctccccctttcctcttcctcc 588

                                                                       
Query: 422 ctcttcctccactctcttcctcctcctcttcctccttttcttctttattcttttattttt 481
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctcttcctcctctctcttcctcctcctcttcctccttttcttctttattcttttattttt 648

                                                                       
Query: 482 atttaaacagcccaggttctgcaaatcactgggggtgctcttctatgttccatgccttca 541
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 649 atttaaacagcccaggttctgcaaatcactgggggtgctattctatgttccatgccttca 708

                                         
Query: 542 tggaacacggatagtctcccagcccccagt 571
           ||||||||||||| ||||||||||||||||
Sbjct: 709 tggaacacggatactctcccagcccccagt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 175
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)