Query= MSMg01no524_b24.b1 MSMg01no524_b24.b1 CHROMAT_FILE:
MSMg01no524_b24.b1 PHD_FILE: MSMg01no524_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:17 2005
(617 letters)
>mm_chr1_13229607_13230626
Length = 1020
Score = 439 bits (227), Expect = e-127
Identities = 239/245 (97%), Gaps = 5/245 (2%)
Strand = Plus / Plus
Query: 377 caccacaatggggcaggcaagcctgcacactctgcgaatccctgggatgtcgaggcagtg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 caccacaatggggcaggcaagcctgcacactctgcgaatccctgggatgtcgaggcagtg 636
Query: 437 ctgtctgcagttcagaccttcccgtcccagcttgcagatcaatcctcctctc----ccag 492
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 637 ctgtctgcagttcagaccttcccgtcccagcttgcagatcaatcctcctctcactcccag 696
Query: 493 aagaggcagttactgttactgttactgttgtgttttcctggagcacacagccacagttac 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aagaggcagttactgttactgttactgttgtgttttcctggagcacacagccacagttac 756
Query: 553 aacaaacagtagctaagtcagctggaggatctgagaacgaaacccgcagtggttatttct 612
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 757 aacaaacagtagctaggtcagctggaggatctgagaacgaa-cccgcagtggttatttct 815
Query: 613 gattg 617
|||||
Sbjct: 816 gattg 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1020
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1010
Effective search space: 613070
Effective search space used: 613070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_b24.g1 MSMg01no524_b24.g1 CHROMAT_FILE:
MSMg01no524_b24.g1 PHD_FILE: MSMg01no524_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:17 2005
(561 letters)
>mm_chr1_13408713_13409673
Length = 961
Score = 971 bits (502), Expect = 0.0
Identities = 544/562 (96%), Gaps = 10/562 (1%)
Strand = Plus / Minus
Query: 1 ttctaagtcaagaaatttttgtcttgtctaactgaaggtttttttcaacttaattattag 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 890 ttctaagtcaagaaatttttgtcttgtctaactgaagg-ttttttcaacttaattattag 832
Query: 61 ctcaggaagaagcgcttcaaaaatag-tatttgaaaagttgatacacacaagaggcacag 119
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 831 ctcaggaagaagcgcttcaaaaat-gctatttgaaaagttgatacacacaagaggcacag 773
Query: 120 ccattttcatttccactgaggttagaaccaaggtcaaaatggagtttgggatgtattgct 179
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 772 ccattttcatttccactgaggttagaaccaaggtcaaaatggagtttcagatgtattgct 713
Query: 180 ggagggatttgtgtgtgtattcgtccaaagtaggccgaagaggctgaggaaggctaatgt 239
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 712 ggagggatttgtgtgtgtattcgtccaaagtaggcctaagaggctgaagaaggctaatgt 653
Query: 240 tctcttccactctggaaatagacttccaagtgaatagaattcactttctgtgaatgcatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 652 tctcttccactctggaaatagacttccaagtgaatagaattcactttctgtgaatgcgtg 593
Query: 300 ccaaagactagtgtgtgtcagtatagaaggggcttggaagcactagcaggtcctgtgcag 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 592 ccaaagactagtgtgtgtcagtatggaaggggcttggaagcactagcaggtcctgtgcag 533
Query: 360 agccacatgccatgtatggcattgggtcagacagaggccgagcaccagcatggctcataa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agccacatgccatgtatggcattgggtcagacagaggccgagcaccagcatggctcataa 473
Query: 420 ggtcccagatgagatgtggtaccatttcccaggcggcaaggagctgtgctaccgagtaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggtcccagatgagatgtggtaccatttcccaggcggcaaggagctgtgctaccgagtaga 413
Query: 480 taagcagaggctctcctggcagttggcagtatcctcattgtaggatgctgaacacaaggc 539
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 412 taagcagaggctctcc-------tggcagtatcttcattgtaggatgctgaacacaaggc 360
Query: 540 ataccaggcctcaaaggcaacc 561
|||||||||||||||| |||||
Sbjct: 359 ataccaggcctcaaagacaacc 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
