ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTTTTGTGTCCCAGCCTGTACAATGGTATTATTCCCCACCCCAGT
CCAAATGGGCTCTATTTTCTCTTACTCTTATTTTCTCAACTATTCATTTT
TAATTGAATTATGTATCATAAAACAAATGAACGTGTACAAAGGCCCTATG
TTTTTCTAGAAATGAATTAGCTATTAGGAAGTAAATATGTGCCCAGAAAC
TATATGTTAGCATGTACTCGCATTCATTTTTTCAGATTATACTTGTTTCA
TTTTAACAAAAATATGACACAGTGCGAACCCATGCTTGTTGTGTTTGAAG
CCATGCAGCACCAATATTTTTTTAAATCTATTTTACATAAAATACAGTTA
GTCCCTCTCATAACAGTGCTATAAAAGAGACATAGGAATGCATGCATACT
ATAATTTACAAAGCCACACAAATAATTGCATGTAAGAATACATAAGCATT
AAGATGCTACTGAGAACGGAGCTACTGAAAACAAGGAAAGTAATTCAGAT
GATCTACCAGCCTGAATGTGACAGTAACAGTCCTGTTGATAATCCCAAAA
TAAATAGACATGTCATATTGAGAAGTCCAATATTATCAAAATCTGAATTC
ATTCACCCATTGGTTCTGTAAGCTTGAATTAAACAATGTACTAGAGGAGA
TCTCGTGAGAGCAATGGGTCACGGCTCACTGTGATAAAAGATAAGAACN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCTTTAGCTCTGAGCCCCATTTTTTAAT
GGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATTG
GATATAGACCCCTATCTGATTTGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGCAA
TTTTATGAGGTCCCGTTTGTCGATTCTTGATCTTACAGCACAAGCCATTG
CTGATATAGCTGTCTCTTGTGAGGCTATGCTGGGGCCTAGCAAACACAGA
AGTGGAGGCTCACAGTCAGCTATTGGATGGATGACTGGGCCCCCAATGGA
GGAGCTAGAGAAAGTACCCAAGCAGCTAAAGGGATCTGCCACCCTATAGG
CAGAACAACAATATGAACTAACCAGTACCCCCTGGAGCTTGTGTCTCTAG
CTGCATAAGTATCAGAAGATGGCCTAGTCGGCCATCACCGGGAAGAGAGG
CCCATTGATTGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACGCC
AGGGCCAAGAAGTGGAAGTGGATGGGTAGGTGAATGGTTGGGGGGNTTTN
NNNTNNTTTTTTNNNTTTNNTTTNTTTTTTTTTTTTTTNTTTTTTTNNTT
NTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTNTTT

Query= MSMg01no524_f09.b1 MSMg01no524_f09.b1 CHROMAT_FILE:
MSMg01no524_f09.b1 PHD_FILE: MSMg01no524_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:34 2005
         (651 letters)



>mm_chr1_61165408_61166459
          Length = 1052

 Score = 1224 bits (633), Expect = 0.0
 Identities = 645/649 (99%), Gaps = 1/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtttttgtgtcccagcctgtacaatggtattattccccaccccagtccaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ggaattcagtttttgtgtcccagcctgtacaatggtattattccccaccccagtccaaat 793

                                                                       
Query: 64  gggctctattttctcttactcttattttctcaactattcatttttaattgaattatgtat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gggctctattttctcttactcttattttctcaactattcatttttaattgaattatgtat 733

                                                                       
Query: 124 cataaaacaaatgaacgtgtacaaaggccctatgtttttctagaaatgaattagctatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 cataaaacaaatgaacgtgtacaaaggccctatgtttttctagaaatgaattagctatta 673

                                                                       
Query: 184 ggaagtaaatatgtgcccagaaactatatgttagcatgtactcgcattcattttttcaga 243
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 672 ggaagtaaatatgtgcccagaaactatatgctagcatgtactcgcattcattttttcaga 613

                                                                       
Query: 244 ttatacttgtttcattttaacaaaaatatgacacagtgcgaacccatgcttgttgtgttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttatacttgtttcattttaacaaaaatatgacacagtgcgaacccatgcttgttgtgttt 553

                                                                       
Query: 304 gaagccatgcagcaccaata-tttttttaaatctattttacataaaatacagttagtccc 362
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaagccatgcagcaccaatattttttttaaatctattttacataaaatacagttagtccc 493

                                                                       
Query: 363 tctcataacagtgctataaaagagacataggaatgcatgcatactataatttacaaagcc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tctcataacagtgctataaaagagacataggaatgcatgcatactataatttacaaagcc 433

                                                                       
Query: 423 acacaaataattgcatgtaagaatacataagcattaagatgctactgagaacggagctac 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 432 acacaaataattgcatgtaagaatacataagcattaagatgctactgagaacagagctac 373

                                                                       
Query: 483 tgaaaacaaggaaagtaattcagatgatctaccagcctgaatgtgacagtaacagtcctg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgaaaacaaggaaagtaattcagatgatctaccagcctgaatgtgacagtaacagtcctg 313

                                                                       
Query: 543 ttgataatcccaaaataaatagacatgtcatattgagaagtccaatattatcaaaatctg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttgataatcccaaaataaatagacatgtcatattgagaagtccaatattatcaaaatctg 253

                                                            
Query: 603 aattcattcacccattggttctgtaagcttgaattaaacaatgtactag 651
           |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aattcattcatccattggttctgtaagcttgaattaaacaatgtactag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space:   667922
Effective search space used:   667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)