BAC Information

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BAC

Clone NameMSMg01-524J15
Chromosome1 (Build37)
Map Location 89,815,052 - 89,957,081
singlet/doubletdoublet
Overlap geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10
Upstream gene4930429A22Rik, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneUgt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524J15.T7 (MSMg01no524_j15.b1)MSMg01-524J15.TJ (MSMg01no524_j15.g1)
ACCAG594639AG594640
length776781
length of high quality
(start - end)		661 (36 - 696)598 (67 - 664)
definitionCHROMAT_FILE: MSMg01no524_j15.b1 PHD_FILE: MSMg01no524_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:55 2005CHROMAT_FILE: MSMg01no524_j15.g1 PHD_FILE: MSMg01no524_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(89,815,052 - 89,815,707)(89,956,490 - 89,957,081)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGC
CTCTTGTTGCTGCTATCCAGTCTACAACAGCTCAACAGCTTGTAAGGTTC
TTTCCTATCCCACCTCATTTCTAGGGTTCTGGAAGGCCACCTGTCCCCCG
TCTTGTACAAGCCCCCTGCTGGTTTTTGTCAACTCAAAAAGTGGAGACAA
TCAAGGTGTGAAGTTTCTCAGAAGATTCAAGCAGCTGCTGAACCCTGCCC
AGGTTTTTGACCTCATGAATGGAGGACCACACCTTGGGTAGGGATTGTGT
GAGACTTTCCATTCTAGGAATTTACAATATTTTGTAGATAAGACATACTC
GTTTTAAAAGGATCAAAAATAAGATTTTTTTTTAAGTTCTGGAGAGATGG
CTTAGTGCATATGAGCATTGGCTGTTCTTGAGAGGACCCAAGTTTGATTC
CCAATATGTAAATGACAGCTCACAACTGTTAGCATTCTGTCTAAGCTTCA
CCCCACAGTTACTTGGCAACAGCCTGATTCACTATAAAAGGGGCTGCTTG
TCCCTCCTAGCTCTTTGGTTCTCGCTTTCTCTTGCTCCTGTCTTGCTCTT
TCTCTGCTTCCTTTCCTACCTCTCTCTCCATTCCCTCCCCTCTCCATGTG
CTGATGGCCGACCGCTCTACTCCTCTACCCCTCTCTTTCTCTCTGTCTCT
GTCTCTCTCTTCCTTTCTCTGCCTCTACTACCCTCTTGACTCCTCTCCCC
ATGTCCCAAATAACTCTATTCTATGN

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGGGGAAGATTCATGGGTGTTGTGTTATAAAA
CTATCATCAAATACCCTAGGTAGGACCTAGCACACTGAACAACAACACAT
GCCTAGACACATAGTCACACATTTTCCTTGTAAATATGTATGTATAAATC
CATCCATACTTTTTTACCCCACAATACAAACACTATGTGTGAAACATGGC
TGCCATATCAAATAGTAAGGTAAATAAATGTCCCCAGAGTTGTTTTTGCT
TGTTTGTTCTTTGGTTTAGATACATAAATGTACTGCATGCAAGCTCTTTA
TCAAGACCCTTCACATATACACATATATGTGAATGTGTGTGGCTGAGCAT
TGTGTGTGTGAATTAGTGTCTGAGACTGAGCGCTGGACTGGTAGCCATGG
CGATGGTGGTGGTTTGTGTGAGTGTGTGTAACTAAGTGTGTGGATGTGCG
GGGTGTGCATGTGTGTGGTACATGCCCAGAGTGATTACCTACCAATCCTA
CCGCTTACCTCATAAGACATCTGAACACAATATGGAAACAAGTCCATGTA
AAGAGAGTGCTAAAGAGAGTTAGCACAGTCTACTTAACAAAATCCAAAGA
CAAAAAGCTAGNAAATATTTCTATTTATTTATTTATTTTTTGGATTTTCC
GAGGAAGGGTTTCTCTGTATAGCCCTTTGCTGTCCTGGAACTCAACTTTG
TAGACAAGGCTGGCCTCGCCTCTCGAAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_j15.b1 MSMg01no524_j15.b1 CHROMAT_FILE:
MSMg01no524_j15.b1 PHD_FILE: MSMg01no524_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:55 2005
         (661 letters)



>mm_chr1_89814845_89815905
          Length = 1061

 Score = 1234 bits (638), Expect = 0.0
 Identities = 651/656 (99%), Gaps = 2/656 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctgtgcctcttgttgctgctatccagtctacaacagctcaacagcttgtaaggttctt 67
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctgtgcctcttgttgctgctacccagtctacaacagctcaacagcttgtaaggttctt 267

                                                                       
Query: 68  tcctatcccacctcatttctagggttctggaaggccacctgtcccccgtcttgtacaagc 127
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcctaccccacctcatttctagggttctggaaggccacctgtcccccgtcttgtacaagc 327

                                                                       
Query: 128 cccctgctggtttttgtcaactcaaaaagtggagacaatcaaggtgtgaagtttctcaga 187
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cctctgctggtttttgtcaactcaaaaagtggagacaatcaaggtgtgaagtttctcaga 387

                                                                       
Query: 188 agattcaagcagctgctgaaccctgcccaggtttttgacctcatgaatggaggaccacac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agattcaagcagctgctgaaccctgcccaggtttttgacctcatgaatggaggaccacac 447

                                                                       
Query: 248 cttgggtagggattgtgtgagactttccattctaggaatttacaatattttgtagataag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttgggtagggattgtgtgagactttccattctaggaatttacaatattttgtagataag 507

                                                                       
Query: 308 acatactcgttttaaaaggatcaaaaataagattttttttt--aagttctggagagatgg 365
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 508 acatactcgttttaaaaggatcaaaaataagatttttttttttaagttctggagagatgg 567

                                                                       
Query: 366 cttagtgcatatgagcattggctgttcttgagaggacccaagtttgattcccaatatgta 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttagtgcatatgagcattggctgttcttgagaggacccaagtttgattcccaatatgta 627

                                                                       
Query: 426 aatgacagctcacaactgttagcattctgtctaagcttcaccccacagttacttggcaac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatgacagctcacaactgttagcattctgtctaagcttcaccccacagttacttggcaac 687

                                                                       
Query: 486 agcctgattcactataaaaggggctgcttgtccctcctagctctttggttctcgctttct 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agcctgattcactataaaaggggctgcttgtccctcctagctctttggttctcgctttct 747

                                                                       
Query: 546 cttgctcctgtcttgctctttctctgcttcctttcctacctctctctccattccctcccc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cttgctcctgtcttgctctttctctgcttcctttcctacctctctctccattccctcccc 807

                                                                   
Query: 606 tctccatgtgctgatggccgaccgctctactcctctacccctctctttctctctgt 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tctccatgtgctgatggccgaccgctctactcctctacccctctctttctctctgt 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_j15.g1 MSMg01no524_j15.g1 CHROMAT_FILE:
MSMg01no524_j15.g1 PHD_FILE: MSMg01no524_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:55 2005
         (598 letters)



>mm_chr1_89956489_89957484
          Length = 996

 Score = 1062 bits (549), Expect = 0.0
 Identities = 583/595 (97%), Gaps = 3/595 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggggaagattcatgggtgttgtgttataaaactatcatcaaataccctaggtaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tctggggaagattcatgggtgttgtgttataaaactatcatcaaataccctaggtaggac 534

                                                                       
Query: 61  ctagcacactgaacaacaacacatgcctagacacatagtcacacattttccttgtaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctagcacactgaacaacaacacatgcctagacacatagtcacacattttccttgtaaata 474

                                                                       
Query: 121 tgtatgtataaatccatccatacttttttaccccacaatacaaacactatgtgtgaaaca 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtatatataaatccatccatacttttttaccccacaatacaaacactatgtgtgaaaca 414

                                                                       
Query: 181 tggctgccatatcaaatagtaaggtaaataaatgtccccagagttgtttttgcttgtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggctgccatatcaaatagtaaggtaaataaatgtccccagagttgtttttgcttgtttg 354

                                                                       
Query: 241 ttctttggtttagatacataaatgtactgcatgcaagctctttatcaagacccttcacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttctttggtttagatacataaatgtactgcatgcaagctctttatcaagacccttcacat 294

                                                                       
Query: 301 atacacatatatgtgaatgtgtgtggctgagcattgtgtgtgtgaattagtgtctgagac 360
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 293 atacacatatatgtgaatgtgtgtggctgagcat--tgtgtgtgaattagtgtctgagac 236

                                                                       
Query: 361 tgagcgctggactggtagccatggcgatggtggtggtttgtgtgagtgtgtgtaactaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgagcgctggactggtagccatggcgatggtggtggtttgtgtgagtgtgtgtaactaag 176

                                                                       
Query: 421 tgtgtggatgtgcggggtgtgcatgtgtgtggtacatgcccagagtgattacctaccaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tgtgtggatgtgcggggtgtgcatgtgtgtggtacatgcccagagtgattacctaccaat 116

                                                                       
Query: 481 cctaccgcttacctcataagacatctgaacacaatatggaaacaagtccatgtaaagaga 540
           ||||| |||||||||||| |||||||||||| ||||| |||||| || ||||||||||||
Sbjct: 115 cctactgcttacctcatatgacatctgaacataatattgaaacaggtacatgtaaagaga 56

                                                                  
Query: 541 gtgctaaagagagttagcacagtctacttaacaaaatccaaagacaaaaagctag 595
           ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 55  gtgttaaagagagttagcacagtcttcttaac-aaatccaaagacaaaaagctag 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 996
Length adjustment: 10
Effective length of query: 588
Effective length of database: 986
Effective search space:   579768
Effective search space used:   579768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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