BAC Information

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BAC

Clone NameMSMg01-524O01
Chromosome1 (Build37)
Map Location 88,711,036 - 88,863,730
singlet/doubletdoublet
Overlap gene4930429A22Rik, EG620213
Upstream geneCab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
Downstream geneLOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524O01.T7 (MSMg01no524_o01.b1)MSMg01-524O01.TJ (MSMg01no524_o01.g1)
ACCAG594851AG594852
length773763
length of high quality
(start - end)		645 (34 - 678)635 (64 - 698)
definitionCHROMAT_FILE: MSMg01no524_o01.b1 PHD_FILE: MSMg01no524_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:17 2005CHROMAT_FILE: MSMg01no524_o01.g1 PHD_FILE: MSMg01no524_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,711,036 - 88,711,677)(88,863,096 - 88,863,730)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTATT
CATATATTTATCCAAAGGCAGGGGAAGCAGTGTAGAGGACTAAACTAGGG
CTTAGGAGTCAGTGGAACTGTTTTCTCTTTATCTCACAGTCCTAATCTAT
CTAAGAAAGGACTGGTCCAGTTTTCATTCCTACCCCCAGTGTATTACTGA
AAATTCTATGAACATTGATATTTTCAGGAGTTTTAGCTCCCCCTCCCTCA
GCTGTAGTTCATGTACATGAATGTGAAGTTTAATGTGGATGTGTTCTTTG
ATTGCTGTCTACCTCATTTTTTGCATGCATATTTCATACTTGTGCACATG
TATATGTGTAACAACATGGTGCTGTTCTTTAAAATGTTATTATTCCTTCA
GCTTCCTTTATCAGATATGATTCACATTCAGTTTGGAGAAATACTTTGTA
AGTGAAGGTGTACACTTAGTCTTATAAAGAGTGAAAAAGAGCTTATGGTT
CCTGTCTTTGTAGCATTTGGTAGATCCAGATATTGTTAGTTGGGCCTTTC
TACTTTAAAACTCTTTCCCAACCATCTTATGACTTTTTGGTTTTAGGAAT
CAATAATGATCATTCCCCAACTTCAAGTGAAGTAGCCAATAGTACTTCTT
TTATTTCTTCTGAATCTAACTGAAGCAGTTCTTCAGTGAAGAACTTTACT
TCATCAGCTTGTTTGGATACTCTGAAGTGGAAGTTGGAAAAGAAAAACTA
GGGTAAAAGGGTTTCACATTGAC

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTAAACACAGCATGAGAATAGAGAGCCTGGTGTTTT
CTTCCCTTTGTGTGTTTCCACCCTCCCTGTACTGATGTTTCTATAAGAAC
AGTACCTTATCCTCCATCAAATGAACAAATAAGCAACAAAACTTCCCCAA
ATCACTTAAGAAACAAGACACTGCCATTTCTACTTCCCCATCCCCTCTCA
CCTCCTGAACTATTGGTTACCTTGTGACAGCAACAGTCCTGGCCTATAAC
ACCCAATCTGCCTGTGCTTAAGGTCTGGCATTCTAAACCTCGATCAAGTG
ATTTTCTTTGTCTCCATTTACAGTGTTCAAATGTGGACACTGGTTTTCCC
TTTTTGGATATAGTCTATAGTTTCCTATACCAGTGGCAAAGCTCTTCATG
GAATCATTGTTGGTAGAACTTCTGTTATAATTTAGAGATGATTTGAATGT
TCTCTCATCAAGGGTTTGTGTAATCAGAGACTGTTTCTCAGTAGAGCAGT
GCTGACAGATAGTAGGAACTTTGACAGGTGAGGCTAATACTGGCTCCTCC
TTTCATCCTAGCCGTCTGACATGCCATATGATGTTTTCTTTTTATACAGT
CATTGCCATACTATCTGCCTTGAAGAGATGAAAAGGGCCCTCACTAGAGG
TGGCCTTATGTCATTTGGACTCCAGTCTTCAAAGTTCAGCATGCACCTTT
AATCTTATCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_o01.b1 MSMg01no524_o01.b1 CHROMAT_FILE:
MSMg01no524_o01.b1 PHD_FILE: MSMg01no524_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:17 2005
         (645 letters)



>mm_chr1_88710833_88711877
          Length = 1045

 Score = 1210 bits (626), Expect = 0.0
 Identities = 638/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttattcatatatttatccaaaggcaggggaagcagtgtagaggactaaact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttattcatatatttatccaaaggcaggggaagcagtgtagaggactaaact 263

                                                                       
Query: 64  agggcttaggagtcagtggaactgttttctctttatctcacagtcctaatctatctaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggcttaggagtcagtggaactgttttctctttatctcacagtcctaatctatctaaga 323

                                                                       
Query: 124 aaggactggtccagttttcattcctacccccagtgtattactgaaaattctatgaacatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaggactggtccagttttcattcctacccccagtgtattactgaaaattctatgaacatt 383

                                                                       
Query: 184 gatattttcaggagttttagctccccctccctcagctgtagttcatgtacatgaatgtga 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 gatattttcaggagttttagctccccctcccccagctgtagttcatgtacatgaatgtga 443

                                                                       
Query: 244 agtttaatgtggatgtgttctttgattgctgtctacctcattttttgcatgcatatttca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtttaatgtggatgtgttctttgattgctgtctacctcattttttgcatgcatatttca 503

                                                                       
Query: 304 tacttgtgcacatgtatatgtgtaacaacatggtgctgttctttaaaatgttattattcc 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatttgtgcacatgtatatgtgtaacaacatggtgctgttctttaaaatgttattattcc 563

                                                                       
Query: 364 ttcagcttcctttatcagatatgattcacattcagtttggagaaatactttgtaagtgaa 423
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 564 ttcagcttcctttatcagatatgattcacattcagtttgaagaaatactttgtaagtgaa 623

                                                                       
Query: 424 ggtgtacacttagtcttataaagagtgaaaaagagcttatggttcctgtctttgtagcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggtgtacacttagtcttataaagagtgaaaaagagcttatggttcctgtctttgtagcat 683

                                                                       
Query: 484 ttggtagatccagatattgttagttgggcctttctactttaaaactctttcccaaccatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttggtagatccagatattgttagttgggcctttctactttaaaactctttcccaaccatc 743

                                                                       
Query: 544 ttatgactttttggttttaggaatcaataatgatcattccccaacttcaagtgaagtagc 603
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 744 ttatgactttttggttttaggaatcaataatgatcattccccaactccaagtgaagtagc 803

                                                     
Query: 604 caatagtacttcttttatttcttctgaatctaactgaagcag 645
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caatagtacttcttttatttcttctgaatctaactgaagcag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_o01.g1 MSMg01no524_o01.g1 CHROMAT_FILE:
MSMg01no524_o01.g1 PHD_FILE: MSMg01no524_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:17 2005
         (635 letters)



>mm_chr1_88862896_88863930
          Length = 1035

 Score = 1220 bits (631), Expect = 0.0
 Identities = 634/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaacacagcatgagaatagagagcctggtgttttcttccctttgtgtgtttccaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tttaaacacagcatgagaatagagagcctggtgttttcttccctttgtgtgtttccaccc 776

                                                                       
Query: 61  tccctgtactgatgtttctataagaacagtaccttatcctccatcaaatgaacaaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tccctgtactgatgtttctataagaacagtaccttatcctccatcaaatgaacaaataag 716

                                                                       
Query: 121 caacaaaacttccccaaatcacttaagaaacaagacactgccatttctacttccccatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 caacaaaacttccccaaatcacttaagaaacaagacactgccatttctacttccccatcc 656

                                                                       
Query: 181 cctctcacctcctgaactattggttaccttgtgacagcaacagtcctggcctataacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cctctcacctcctgaactattggttaccttgtgacagcaacagtcctggcctataacacc 596

                                                                       
Query: 241 caatctgcctgtgcttaaggtctggcattctaaacctcgatcaagtgattttctttgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 caatctgcctgtgcttaaggtctggcattctaaacctcgatcaagtgattttctttgtct 536

                                                                       
Query: 301 ccatttacagtgttcaaatgtggacactggttttccctttttggatatagtctatagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccatttacagtgttcaaatgtggacactggttttccctttttggatatagtctatagttt 476

                                                                       
Query: 361 cctataccagtggcaaagctcttcatggaatcattgttggtagaacttctgttataattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cctataccagtggcaaagctcttcatggaatcattgttggtagaacttctgttataattt 416

                                                                       
Query: 421 agagatgatttgaatgttctctcatcaagggtttgtgtaatcagagactgtttctcagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agagatgatttgaatgttctctcatcaagggtttgtgtaatcagagactgtttctcagta 356

                                                                       
Query: 481 gagcagtgctgacagatagtaggaactttgacaggtgaggctaatactggctcctccttt 540
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gagcagtgttgacagatagtaggaactttgacaggtgaggctaatactggctcctccttt 296

                                                                       
Query: 541 catcctagccgtctgacatgccatatgatgttttctttttatacagtcattgccatacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 catcctagccgtctgacatgccatatgatgttttctttttatacagtcattgccatacta 236

                                              
Query: 601 tctgccttgaagagatgaaaagggccctcactaga 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tctgccttgaagagatgaaaagggccctcactaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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