XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAGTTC
TTATTCTGTGAGATTGTATATCCTCTGATGGCCTTCAATCCCAAAGAAGT
GGGGAATGAAAACCTTTTATTTTGTAGATGAAAAAAATACAACTGGGCAG
TGGTGGCCCACGACTCAGGAGGCAGAGGCAGGCAGATCTCTGAGTTCGAG
GCCAGCCTGATCTACAGAGGGAGTTCAGGACAGCCAGGGCTAAACAGAGA
AACCCTATCTCAAAAAAAAAAAAAAATACAAGCCACAAAATGTTATCAGG
AATACCATCTAGAGTTACTAAAGAATTCTTATGTTTCAATTGATCACCAA
CAGTAGATAATACTATGGAAAGGATAAACAAATCACAATTGAACTTTCTC
AAGTTGAGACAGATATCAACATTCAACATGTTTAGAAAACACCCCCAGGT
AATGGCCATCAATGTACACCAGAGTCTGAAAAACACAGCCAGATAGGAGA
TAGTGTTAGATCAAAAATGTTTTCCACTTCCCTATACATTCCCTGGACCA
GTGTTTCCTTGTACTAGTTTTTAGGAGTGAAGACACTGAGTATGGCTTTC
ATCAGATTCCACTGGGGAATTTTGAAAATGCATTTCCCTGTGTACTTTAT
AAAGGCACTAAACATAACTGTTAACCTATTGATACTGAACTTATCTGTGT
TAGGATTGAGATTGCATCTGAAAAAAAACAGTACAAAAAATCCCTGACTT
CATGGCACTTACATTCTAAAGGG

AGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCCCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTTAGGTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACT
CAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTG
GGAACAAAACACCCATGGAAGGAGTAACAGAGACAAAGTTTGGAGCTGAG
ATGAAAGGATGGACCATGTAGAGACTGCCATATTCAGGNATCCACCCCAT
AATCAGCATCCAAACGCTGACACCATTGCATACACTAGTAAGATTTTATC
GAN

Query= MSMg01no524_o03.b1 MSMg01no524_o03.b1 CHROMAT_FILE:
MSMg01no524_o03.b1 PHD_FILE: MSMg01no524_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:17 2005
         (669 letters)



>mm_chr1_51539213_51540280
          Length = 1068

 Score = 1131 bits (585), Expect = 0.0
 Identities = 646/667 (96%), Gaps = 3/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtagttcttattctgtgagattgtatatcctctgatggccttcaatcccaaag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcagtagttcttactctgtgagattgtatatcctctgatggccttcaatcccaaag 262

                                                                       
Query: 65  aagtggggaatgaaaaccttttattttgtagatgaaaaaaatacaactgggcagtggtgg 124
           ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 263 aagtggggactgaaaaccttttattttgtagatgaaaaaaataaaactgagcagtggtgg 322

                                                                       
Query: 125 cccacgactcaggaggcagaggcaggcagatctctgagttcgaggccagcctgatctaca 184
            |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 323 tccacaactcaggaggcagaggcaggcagatctctgagtttgaggccagcctgatctaca 382

                                                                       
Query: 185 gagggagttcaggacagccagggctaaacagagaaaccctatctc--aaaaaaaaaaaaa 242
           ||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||||
Sbjct: 383 gagggagttcaggacagccagggctaaacagagaaatgctatctcgaaaaaaaaaaaaaa 442

                                                                       
Query: 243 aatacaagccacaaaatgttatcaggaataccatctagagttactaaagaattcttatgt 302
           |||||||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct: 443 aatacaagccacaagatgttaacaggaaaaccatctagagttactaaagaattcctatgt 502

                                                                       
Query: 303 ttcaattgatcaccaacagtagataatactatggaaaggataaacaaatcacaattgaac 362
           | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 tccaatcgatcaccaacagtagataatactatggaaaggataaacaactcacaattgaac 562

                                                                       
Query: 363 tttctcaagttgagacagatatcaacattcaacatgtttagaaaacacccccaggtaatg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttctcaagttgagacagatatcaacattcaacatgtttagaaaacacccccaggtaatg 622

                                                                       
Query: 423 gccatcaatgtacaccagagtctgaaaaacacagccagataggagatagtgttagatcaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gccatcaatgtacaccagagtctgaaaaacacagccagataggagatagtgttagatcaa 682

                                                                       
Query: 483 aaatgttttccacttccctatacattccctggaccagtgtttccttgtactagtttttag 542
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 683 aaatgttttccacttccctatacattccctggaccagtgtttccttaaactagtttttag 742

                                                                       
Query: 543 gagtgaagacactgagtatggctttcatcagattccactggggaattttgaaaatgcatt 602
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 743 gagtgaagacactgagtatggctt-catcagattccactggggaattttgaaaatgcatt 801

                                                                       
Query: 603 tccctgtgtactttataaaggcactaaacataactgttaacctattgatactgaacttat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tccctgtgtactttataaaggcactaaacataactgttaacctattgatactgaacttat 861

                  
Query: 663 ctgtgtt 669
           |||||||
Sbjct: 862 ctgtgtt 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space:   697222
Effective search space used:   697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)