BAC Information

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BAC

Clone NameMSMg01-525C11
Chromosome1 (Build37)
Map Location 72,785,290 - 72,785,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
Downstream geneIgfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525C11.T7 (MSMg01no525_c11.b1)MSMg01-525C11.TJ (MSMg01no525_c11.g1)
ACCAG595060AG595061
length758765
length of high quality
(start - end)
573 (65 - 637)147 (67 - 213)
definitionCHROMAT_FILE: MSMg01no525_c11.b1 PHD_FILE: MSMg01no525_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:39 2005CHROMAT_FILE: MSMg01no525_c11.g1 PHD_FILE: MSMg01no525_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGTGGTCGTTATACGACTCACTTTTTCCATAAGATCCGCGGAATTCTG
ATCTCTTCTAAGTTGTTGTAAGGAGTAAACACCTGTAAAGTTTAGCACAG
CTGGGCTCAGGAGTGCCCAGTCAAAGCTAGAAGCACTTAAAGAAATAAAA
ACAAAACAAAACAAAACAAAACAAAACAAAAAGTCAGTAAATCGTCGGGG
GTGATCATGGGGTAGACCCCTGAGCACCAGGTAACTTCGCCAGTTCCTGG
TGACCAGTTAGCTTGAGCTGCTTTCTTTCTGCTCCCTCGTCTTCCTGTGG
CTGCCCAGCACCCCAGATCAGACCAAAGTCATAGCCACACTGTCCTAAGG
ACGGTGATGTGCTCTGGCAGAACCAGGCAAAAGACCTTCCTGTCTCCTTC
ATCTCTAGGTAAGCAGGTGCCCGAGGCGCCCTTACTCACAACTCTCAGGC
ATCTGCCTTTGACCTTGGCACCTTCCCCAGGCATTCTGCTGGGTACCTGG
GATGCTGCCAAGTCACCCAGCCTGCCAAGTACACTCTTCCTTCACTCCTG
TGACATAGAAAACCCACGTCCCTTCCAGCAGGGATGCTGCCTGGAGGCCT
GTAGGGAGGTGACTGTTCTGACGCACTCCCTTCTTGCTTGCACAGGGGCC
ATCTTCTGAGAAAGGCTTTCTGCTTCAAACCTTGCTTCTAACTCCAAGTA
TCCATCTCTGTCAGCGTTTTTAAGAGACATAAGCTGATTCCACTCCATGT
TCTGTTCT
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTTTATATGAGTCTTTACAATACACTCTGCTG
CAGGCTTTACCAGGGTCCACCCTCTGGTCACCCCAAATCAGTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTTCTACTGCTTAGATAGCTCTATCCTAACACACTAATCT
GTGGTGACATGTAGATCATTATTGAAGAAGTACGAAAAGCCAAACACGAG
CGGTTTGCTTGACTTCTTTGTAATGAACTGGGAAGATGGTTGACCTACTC
TTTCATAATGACCACTCTGTGAAGAATCACATAATGTATCCCTGGGGGGA
ATCCGCTCACAGTATACTGAGCGTGGGAGCTCCTTTATCGTGAGCGCAGC
ATGGCCCACGATTTTTGGTACTGTCGAAGTCTCTGTGTCCAATCACGTGG
ACGATATACCATCTTTGGGCGGAAGGATGAGTTATGTTTCATGGGTGGAG
AAGGTTACGTTTTTTTGTGATTGACAAAGCATGTTAGTTAAGTTCTTTAT
GGTAGCGATAGTATAGGGGGGTTGCCTTCTTGGATATAAATAAAGCGGTA
TAATAAGAATAAGGGGGTAGGTTCGCAGTATGGAGTGAATCCATTTTAGA
CTATGTTTCGTAAAGGGGGGGAAACGTGAGTTTTATAGGGGCGTATTCTT
ATACACGCGGTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_c11.b1 MSMg01no525_c11.b1 CHROMAT_FILE:
MSMg01no525_c11.b1 PHD_FILE: MSMg01no525_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:39 2005
         (573 letters)



>mm_chr1_72785080_72786052
          Length = 973

 Score = 1035 bits (535), Expect = 0.0
 Identities = 559/573 (97%), Gaps = 10/573 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgtaaggagtaaacacctgtaaagtttagcacagctgggctcaggagtgcccagtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gttgtaaggagtaaacacctgtaaagtttagcacagctgggctcaggagtgcccagtcaa 270

                                                                       
Query: 61  agctagaagcacttaaagaaataaaaacaaaacaaaacaaaacaaaacaaaacaaaaagt 120
           ||||||||||| |||||||||||          |||||||||||||||||||||||||||
Sbjct: 271 agctagaagcatttaaagaaata----------aaaacaaaacaaaacaaaacaaaaagt 320

                                                                       
Query: 121 cagtaaatcgtcgggggtgatcatggggtagacccctgagcaccaggtaacttcgccagt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cagtaaatcgtcgggggtgatcatggggtaggcccctgagcaccaggtaacttcgccagt 380

                                                                       
Query: 181 tcctggtgaccagttagcttgagctgctttctttctgctccctcgtcttcctgtggctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctggtgaccagttagcttgagctgctttctttctgctccctcgtcttcctgtggctgc 440

                                                                       
Query: 241 ccagcaccccagatcagaccaaagtcatagccacactgtcctaaggacggtgatgtgctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagcaccccagatcagaccaaagtcatagccacactgtcctaaggacggtgatgtgctc 500

                                                                       
Query: 301 tggcagaaccaggcaaaagaccttcctgtctccttcatctctaggtaagcaggtgcccga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcagaaccaggcaaaagaccttcctgtctccttcatctctaggtaagcaggtgcccga 560

                                                                       
Query: 361 ggcgcccttactcacaactctcaggcatctgcctttgaccttggcaccttccccaggcat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctcccttactcacaactctcaggcatctgcctttgaccttggcaccttccccaggcat 620

                                                                       
Query: 421 tctgctgggtacctgggatgctgccaagtcacccagcctgccaagtacactcttccttca 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 tctgctgggtacctgggatgctgccaagtcagccagcctgccaagtacactcttccttca 680

                                                                       
Query: 481 ctcctgtgacatagaaaacccacgtcccttccagcagggatgctgcctggaggcctgtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcctgtgacatagaaaacccacgtcccttccagcagggatgctgcctggaggcctgtag 740

                                            
Query: 541 ggaggtgactgttctgacgcactcccttcttgc 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 ggaggtgactgttctgacgcactcccttcttgc 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)