Query= MSMg01no525_c21.b1 MSMg01no525_c21.b1 CHROMAT_FILE:
MSMg01no525_c21.b1 PHD_FILE: MSMg01no525_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:41 2005
(580 letters)
>mm_chr1_10924491_10925470
Length = 980
Score = 1002 bits (518), Expect = 0.0
Identities = 563/578 (97%), Gaps = 4/578 (0%)
Strand = Plus / Minus
Query: 5 gaattctatacacctcacacatagataacctcatgccactggcagtcagcattcgtgtcc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 780 gaattctatacaccacacacatagataacctcatgccactggcagtcagcatttgtatcc 721
Query: 65 accagcttggagagctcctcagcccattaggagaattgtcaaaaacagacagcagctagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 accagcttggagagctcctcagcccattaggagaattgtcaaaaacagacagcagctagc 661
Query: 125 actgcactttcttactgtaggcaatgttaaacatagggctgggcctccaattgggagtga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 actgcactttcttactgtaggcaatgttaaacatagggctgggcctccaattgggagtga 601
Query: 185 aaccttcatatttttcaattccatttggctcagatgccagcagcctcacttcatttcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aaccttcatatttttcaattccatttggctcagatgccagcagcctcacttcatttcttt 541
Query: 245 ccatggatcacaatctagaagccatacaaggatctcccttcaccccctggatggcctctt 304
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ccatggctcacgatctagaagccatacaaggatctcccttcaccccctggatggcctctt 481
Query: 305 tagtccatcagtatattgaatgtgttctttctcaatcctgagacttcctaatgctgttca 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 480 tagtccatcagtatattgaatgtgttctttctcaatcctgaggcttcctaatgctgttca 421
Query: 365 tagttttcatcaatccctgtccaatattcacttttccgttctagacatg-tgtgagctct 423
||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct: 420 tagttttcatcaacccctgtccaatattcacttttccgttctagacatgat-tgagttct 362
Query: 424 tatttgcctattcttgagtatatatgactagacttcaatggatcattgtattacacttgt 483
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 361 tatttgcttattcttgagtatatatgacgagacttcaatggattattgtattacacttgt 302
Query: 484 attcttagggtccaggaatatttttgtgtgttggttcctttatattttccttctaaacaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attcttagggtccaggaatatttttgtgtgttggttcctttatattttccttctaaacaa 242
Query: 544 aacctaccttgatcttct-aggttaattttaacttctc 580
|||||||||||||||||| || ||||||||||||||||
Sbjct: 241 aacctaccttgatcttctcag-ttaattttaacttctc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_c21.g1 MSMg01no525_c21.g1 CHROMAT_FILE:
MSMg01no525_c21.g1 PHD_FILE: MSMg01no525_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:42 2005
(561 letters)
>mm_chr1_10764892_10765852
Length = 961
Score = 1013 bits (524), Expect = 0.0
Identities = 553/565 (97%), Gaps = 4/565 (0%)
Strand = Plus / Plus
Query: 1 tagggggatttgtgctaact----ttaaacagctgaagaaaagatgggcttgggttacac 56
||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 197 taggggggtttgtgctaactttacttaaacagctgaagaacagatgggcttgggttacac 256
Query: 57 tgcatatttgttctaacttatttaattttggtgccgttagggactgaacccagtgccttg 116
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 257 tgcatatttgttctaacttatttaattttggtgccattagggactgaacccagggccttg 316
Query: 117 tgctttcaaggcaagtggtctgcctctgagctgtattaccaaccgtgcaacttgtttctt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgctttcaaggcaagtggtctgcctctgagctgtattaccaaccgtgcaacttgtttctt 376
Query: 177 aatagatcacaaagaaaagcctgacctcctttattcactctcatacaacgtcccaagacc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatagatcacaaagaaaagcctgacctcctttattcactctcatacaacgtcccaagacc 436
Query: 237 ctatctgtatccttgttgaaaaatagacatttttgatttatggatgatgtgtttgtttgt 296
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 437 ctatctgtatccttgttgaaaaatagaaaattttgatttatggatgatgtgtttgtttgt 496
Query: 297 aagactggcatactccctattgccaagagggcatatgcacacattatcctgaatgtctat 356
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagaccggcatactccctattgccaagagggcatatgcacacattatcctgaatgtctat 556
Query: 357 cttcctactctaccagaccattggtggtgttcttattgttgtcttgtaacttgattcaag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cttcctactctaccagaccattggtggtgttcttattgttgtcttgtaacttgattcaag 616
Query: 417 acacttcatgacacttgagcccagctaatgaaggggcagaacagacagtggcactgaaaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acacttcatgacacttgagcccagctaatgaaggggcagaacagacagtggcactgaaaa 676
Query: 477 ggcagatgaggagttggacattttgatatctttgcaaatcctaattttgtcttangaact 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 677 ggcagatgaggagttggacattttgatatctttgcaaatcctaattttgtcttaggaact 736
Query: 537 cataattgagcattttatccgtttt 561
|||||||||||||||||||||||||
Sbjct: 737 cataattgagcattttatccgtttt 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
