XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGCACTTCTTTTATAACCATAAAACTCCCATTCAAACAACATGCTTATG
AATCCTCTTAAAATATTGAAGATTTGGCAACACTGGGCGTATCCTCCCCA
GCTAACAGGTACCGGAGAGGGGCTTAGGAGCCATTTCCTTCTAATGCTCA
CCACCACTTCCTGTTATTCTCACCCAGGTTGACTGAGCGTGACCCGACTC
TCCAGTGACACCCAGTCTGGGTCTGTTTGTATCAATGGGAAACAACACCT
ACTCCTTTCCCCAAAGGTAGTTTTCAAAAAAACAGGAATTGTTTTACTTT
ATAAAATCGCTTTATTATAACGATCTAAAAAAAAAAAATCAATAAACACA
CCTAGATTAAGGAAGCCACTCAAGCAAACACTTGCCCAGTCCCAAATTCT
GTCATCTCTAGGAACTTCTCTGCAGTTAGAATCGCCATTCTGAAGTGTCA
CTAATAGTTACATTTTAATGCACTTGTCCATGTGAAAAAGGAAAAAAGAA
TTTTAAAAAATTAAAAAAAAAATACTAAGACACAATTGAAACCAGAAAGA
CTATGAATGTATATCCTCTTGTGACTCATGGGTCTTTTGACCGCATTCCT
TCCCTTCTTTTGCCTAATTCTCATTCCCTTTCCTAAATGTAATTCCATGT
ATACAAACACATGCTTGCCCACCTGAATAG

TGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGG
GTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAAGGATTTT
CGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGG
ATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTAT
TGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTC
ATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTT
TGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCA
CTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAAC
TGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGATCAACTTGAT
CCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCG
TCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGAT
GGTGTTTTGGATTTCTTCAGGA

Query= MSMg01no525_d09.b1 MSMg01no525_d09.b1 CHROMAT_FILE:
MSMg01no525_d09.b1 PHD_FILE: MSMg01no525_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:44 2005
         (539 letters)



>mm_chr1_132371355_132372293
          Length = 939

 Score =  982 bits (508), Expect = 0.0
 Identities = 529/536 (98%), Gaps = 1/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgcacttcttttataaccataaaactcccattcaaacaacatgcttatgaatc 64
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgcacagattttataaccataaaactcccattcaaacaacatgcttatgaatc 264

                                                                       
Query: 65  ctcttaaaatattgaagatttggcaacactgggcgtatcctccccagctaacaggtaccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcttaaaatattgaagatttggcaacactgggcgtatcctccccagctaacaggtaccg 324

                                                                       
Query: 125 gagaggggcttaggagccatttccttctaatgctcaccaccacttcctgttattctcacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagaggggcttaggagccatttccttctaatgctcaccaccacttcctgttattctcacc 384

                                                                       
Query: 185 caggttgactgagcgtgacccgactctccagtgacacccagtctgggtctgtttgtatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggttgactgagcgtgacccgactctccagtgacacccagtctgggtctgtttgtatca 444

                                                                       
Query: 245 atgggaaacaacacctactcctttccccaaaggtagttttcaaaaaaacaggaattgttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgggaaacaacacctactcctttccccaaaggtagttttcaaaaaaacaggaattgttt 504

                                                                       
Query: 305 tactttataaaatcgctttattataacgatctaaaaaaaaaaaatcaataaacacaccta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactttataaaatcgctttattataacgatctaaaaaaaaaaaatcaataaacacaccta 564

                                                                       
Query: 365 gattaaggaagccactcaagcaaacacttgcccagtcccaaattctgtcatctctaggaa 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 gattaaggaagccactcaagcaaacacttgcccagtcccaagttctgtcatctctaggaa 624

                                                                       
Query: 425 cttctctgcagttagaatcgccattctgaagtgtcactaatagttacattttaatgcact 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttctctgcagttagaattgccattctgaagtgtcactaatagttacattttaatgcact 684

                                                                   
Query: 485 tgtccatgtgaaaaaggaaaaaagaattttaaaaaa-ttaaaaaaaaaatactaag 539
           ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 685 tgtccatgtgaaaaaggaaaaaagaatttaaaaaaaattaaaaaaaaaatactaag 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)