BAC Information

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BAC

Clone NameMSMg01-525F03
Chromosome1 (Build37)
Map Location 34,408,814 - 34,409,491
singlet/doubletsinglet
Overlap geneLOC383629
Upstream geneEG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913
Downstream geneLOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525F03.T7 (MSMg01no525_f03.b1)MSMg01-525F03.TJ (MSMg01no525_f03.g1)
ACCAG595185AG595186
length746742
length of high quality
(start - end)		684 (40 - 723)605 (70 - 674)
definitionCHROMAT_FILE: MSMg01no525_f03.b1 PHD_FILE: MSMg01no525_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:53 2005CHROMAT_FILE: MSMg01no525_f03.g1 PHD_FILE: MSMg01no525_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AACAGTTCTGTTCACCCATCTTAAGAATAGGCCTTGCTTTTAATCAGGTC
GCCAACAGATCAGTGGAAGGGGATTTGTTTCAAAGGATAGAAACAGATGG
AAAAATATTAAAATTATATGGGATTTATAATCATTCCATTGTAATAGAGA
TTATTATGCATCATTTAAAAAATACCTACAGCAAAGTGGTTAGTAGGAAA
AGGAATTAATTTAGTAATTAATTAAAAAGTAATTATTGTTGGTTGAGAAG
TACAACTGATATGAAATGCAATGAAAGCAAGCATTTGAGTGACATTGGCC
CTGTGCTTCTGTTTTAAACTGTATTTTCTGTAGCTTTTGCACTAGATATC
AGAGTGGAATCATGTTCCGAGGACATTTGAAGTGTTCATGGCTTCCTAGA
TGAGAAATTTAAGCCATATAGTTAGAATGACTCCTAGCATACATATCAAG
ATATGAGAGTCAACATTTTAATATATCTAAATACCTAATTATGTATATTT
ATGTATATTTCCCTGAAATATTTTTGTTCATTATGATTTACAATAATATA
AATATATATAGTCTATCATAATATATTTAATAATTTCAAATGTTTCCAAG
ATAGAATCCCTCTATAGCTCTTATTTTTGTAATAAAAAATGTGCCAAAAC
TACCAAATTAGTATCACTCGAAAAAGAAACAATAGTGTTAGCTGAG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGCCTAGAACCTACACAGTGGAAGAAGAG
AACTAACTCGCAAAATCCACACATGGTCTCACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACTGTCCTTCTTAG
GGAGCTAATGGATGTACTGGTGATGTTCTTTGCTGTAAGAAGCAGTTTGA
TTTCCAGTCCAGGACAAGGGACTGAGGTGCATATTTTGTTTATCAAAGCA
GATGTAGCCTCCAGGTTCTCCGAGCATCTCTCAATCCCTACCTGGCATAC
CCTGTCCTAAACATTGAACTTTCCAGCCAGGGGCTGGGCTGCCCTGCCCT
TAAGAGGTTCTGCCCTATATAATCCAGACATTTTGGTCTCTTGCTCTCTT
CTCTTCTCCCTCTGCCTATGAGAGAGCACTTTCTCTCTTTCTCCTCTTCC
CCACCCCACCCCATGACGATTTCCCTGGCCTCCCCTGACCTCAAACCTTG
GGGCTAGTAAACTTGCCCTGAGAGAGCAGCTTCCCAATACACCTGCCTTT
AATATAGTCTAATCCGGTTTAAATGGACTCATGTCACTGTCTGCAGAGAA
ATGACCTATCAGAGCTTCTTAGTTCCATGAGGTCACATTAGTTCGTTGTT
GGTCTTAATGCCTGTGCTACCAGGGCCCTCCTCAGAAAGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_f03.b1 MSMg01no525_f03.b1 CHROMAT_FILE:
MSMg01no525_f03.b1 PHD_FILE: MSMg01no525_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:53 2005
         (684 letters)



>mm_chr1_34408610_34409694
          Length = 1085

 Score = 1180 bits (610), Expect = 0.0
 Identities = 661/678 (97%), Gaps = 2/678 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaacagttctgttcacccatcttaagaataggccttgcttttaatcaggtcgcc 64
           ||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacagaaatgctcacccatcttaagaataggccttgcttttaatcaggtcgcc 264

                                                                       
Query: 65  aacagatcagtggaaggggatttgtttcaaaggatagaaacagatggaaaaatattaaaa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 aacagatcagtggaaggggatttgtttcaaaggatagaaacagatggaaaaatatttaaa 324

                                                                       
Query: 125 ttatatgggatttataatcattccattgtaatagagattattatgcatcatttaaaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatatgggatttataatcattccattgtaatagagattattatgcatcatttaaaaaat 384

                                                                       
Query: 185 acctacagcaaagtggttagtaggaaaaggaattaatttagtaattaattaaaaagtaat 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 acctacagcaaagtggttagtaggaaaaggaattaatttagtaattaactaaaaagtaat 444

                                                                       
Query: 245 tattgttggttgagaagtacaactgatatgaaatgcaatgaaagcaagcatttgagtgac 304
           ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 445 tattgttggttgagaggtacaactgatatgaaatgcaatcagagcaagcatttgagtgac 504

                                                                       
Query: 305 attggccctgtgcttctgttttaaactgtattttctgtagcttttgcactagatatcaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attggccctgtgcttctgttttaaactgtattttctgtagcttttgcactagatatcaga 564

                                                                       
Query: 365 gtggaatcatgttccgaggacatttgaagtgttcatggcttcctagatgagaaatttaag 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 gtggaatcatgttccgaggacatttgaagtgttcatggcttcctagatgagaaattaaag 624

                                                                       
Query: 425 ccatatagttagaatgactcctagcatacatatcaagatatgagagtcaacattttaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccatatagttagaatgactcctagcatacatatcaagatatgagagtcaacattttaata 684

                                                                       
Query: 485 tat-ctaaatacctaattatgtatatttatgtatatttccctgaaatatttttgttcatt 543
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tattctaaatacctaattatgtatatttatgtatatttccctgaaatatttttgttcatt 744

                                                                       
Query: 544 atgatttacaataatataaatatatatagtctatcataatatatttaataatttcaaatg 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 745 atgatttacaataatataaatatatatagtctatcataatatatttaataatttcaaacg 804

                                                                       
Query: 604 tttccaagatagaatccctctatagctctt-atttttgtaataaaaaatgtgccaaaact 662
           |||||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||
Sbjct: 805 tttccaagatagaatccctctatagctctttatttttataataagaaatgtgtcaaaact 864

                             
Query: 663 accaaattagtatcactc 680
           | ||||||||||||||||
Sbjct: 865 atcaaattagtatcactc 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space:   724550
Effective search space used:   724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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