BAC Information

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BAC

Clone NameMSMg01-525H15
Chromosome1 (Build37)
Map Location 178,228,198 - 178,228,546
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525H15.T7 (MSMg01no525_h15.b1)MSMg01-525H15.TJ (MSMg01no525_h15.g1)
ACCAG595304AG595305
length753765
length of high quality
(start - end)		669 (34 - 702)580 (67 - 646)
definitionCHROMAT_FILE: MSMg01no525_h15.b1 PHD_FILE: MSMg01no525_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:06 2005CHROMAT_FILE: MSMg01no525_h15.g1 PHD_FILE: MSMg01no525_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATCT
TTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTC
TGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATAT
AATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCT
GGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAATGTGTTCTTG
GATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGATATTCATAA
GAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTA
GGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTC
TACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTT
TGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTT
TTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGGGATATGGG
ACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATC
TGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTAT
AAGCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGATCTGT
TGTTATGTCTCCCTTTTCATTTCTGATTTTGTTGATTAGGATTTTGTCCC
TTT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGG
GATTAAAGGTGTGCACCACCACCACCCGGCCTCAGAGCAGCTCTTAACAA
GGATAGCTCTTGCAGCTAGGGAGAAGGTTTGGTGAGAAAGGGTGTTTTCT
GCCCAAGCATGAACAGACCTGAGTTCAGATCTCCAGAATCCACATTCACA
AATGAAAAATAGTCAAATATAGCCACAAATGAACCTTTAACCTTGGCACT
TTGGTGGACCAGGGCAGGGAGGGGGGGTCTCTGGTACTTGATGGCTGCCA
GCCAGCAGTGTTCCAGGTTCAGACAGACACCCTGTATCTAAGGAATAGAA
AGCCATAGAGCAGGACCCCTGACATCCTTCTCCAGCTTTTGGACACACAT
AGTTATGTGTATACACACACACACACACACACACACACACACACACCGAA
AGGAGAGTATTCTCCAGCTTTTCTTAGCAATACTGTCCAGCTCCTTAACA
CCCCATAATGCCTTTGAGTCCTGAAACAGAGTATCTACTTGATAAAAATA
TGTTTCATGAATAAATAGAACAGTCTTTGGGCTATAACCTGGGGACATTC
TCTTTTCTTCTGTTTTGTGCTGGAAAAGCACAGGTAAAGGAGGTACTGCC
TGCGAGAGACTCTGGGTGATGGGTGTCACCTGAATCTAAAAATACTTGAG
ATTATATTTGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_h15.g1 MSMg01no525_h15.g1 CHROMAT_FILE:
MSMg01no525_h15.g1 PHD_FILE: MSMg01no525_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:06 2005
         (580 letters)



>mm_chr1_178227568_178228547
          Length = 980

 Score =  478 bits (247), Expect = e-139
 Identities = 303/349 (86%), Gaps = 42/349 (12%)
 Strand = Plus / Minus

                                                                       
Query: 274 gatggctgccagccagcagtgttccaggttcagacagacaccctgtatctaaggaataga 333
           ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 979 gatggctgccagccagcagtggtccaggttcagacagacaccctatatctaaggaataga 920

                                                                       
Query: 334 aagccatagagcaggacccctgacatccttctccagcttttggacacacatagttatgtg 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 aagccatagagcaggacccctgacatccttctccagcttttggacacacatagttatgtg 860

                                                                       
Query: 394 tatac------------------------------------------acacacacacaca 411
           |||||                                          |||||||||||||
Sbjct: 859 tatacacacacacacacacacacacacacacatacacacacacacaaacacacacacaca 800

                                                                       
Query: 412 cacacacacacacacacaccgaaaggagagtattctccagcttttcttagcaatactgtc 471
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 799 cacacacacacacacacaccgaaaagagagtattctccagcttttcttagcaatactgtc 740

                                                                       
Query: 472 cagctccttaacaccccataatgcctttgagtcctgaaacagagtatctacttgataaaa 531
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagcgccttaacaccccataatgcctttgagtcctgaaacagagtatctacttgataaaa 680

                                                            
Query: 532 atatgtttcatgaataaatagaacagtctttgggctataacctggggac 580
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atatgtttcatgaataaatagaacagtctttgggctataacctggggac 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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