XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAGAGG
TTCTAACTTAGAGAAATAGGAAAATAGAGGGTCTAGACCTCATATCCTGA
AAGCAGGATCACAAAGGGAAATAGGATGAGCTTTAGGAAATCCTGAGGGG
GACTGCAGGCTATTAGCAAAACTTTATCATAGTCAAGTCACTATCAGGCA
AGAGTAGGCACTTGCAAGTCTTCCTGCCTCTGCCTTAGTGTTGTGGGAAG
GCTGAGGGCAGGAAGTTTGGGAGTTCTGAGGCTAGAAAACCAAGAAGTAA
AGAGCAAGATCATGTGTGTCTACCAGAACATATGTGGTAGCTAGGCAATA
CAGGAGGATAATAGGTGAAGGTGATGCCTTTATGAGTAATGCAGGTGAGG
ATAGTCCAGTAGGAACAAAGACAACCATTATGCTTCCTCCTGTTTTAGTT
GGGGTGTTTTGGGAGAGCACCCACAAGGCTCCCTTCTATTATAGATGAAG
TGTTATTGAAGGTACCAAGTAAGGTTCCTTCTGTACCACCTGGGGTGTTA
TGGGAGGGTATCTGCAAGGGTTCTTTCTGCAGTAGCTGGAGTGTTAAAGG
AGAGTACCCAGTATACTTTTTTTCCATTGCAGCTGGGGCATTATGGGTAA
CAGCACTGGAGTCTAGGAGAGAGCTGGAAAGAGCTTGTATAACAGCAGCA
ATGTGACAAAAAAACAGAAGTAAGGCTATGGGGACACTCCTGGCAGATGA
GACAAGTGAGGGTGGACTTACTG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTACTGAATTCCAAGTAGTCAGCTTACAAGGTCTTTC
TAGGGTGTTGAAACACTGGAAAAGACTGTCAGGATACAATTTTAAAAAGC
ACTATAGTAAGATAACACTAAAGGAGAATACATGGATCTTCCTCAACAGC
CTTGGGTGACAGGCAGGTAACAGACAGGAGGGGGTGACAACCGGCTCCTT
AGCACAAGGCCATATGGCTTGTTAGGCTGGGAGGCTGTGAAGGGCTTGCC
CTTTTCATGGTATGGTCTCCAACTTCTCTCCCGCCTTTGAATTAAACTTA
ATAAGGCCACACTTAACTGAGGTGATCAAATGATCTTCTCATCCTTGGAT
GAGTGGGCATTAATCATGGCTGGGGGAGCATTGACTCAATTCCTCCCGTG
GGTGCTGTCATGACCCACAATCATGGATCTTGGTATCTTTTGGGGAGGGG
AGGCAGAGCCTTAGAAAGATATTTTTGGTTATAACTGGAACTAGATACCA
ACCTACATCCAAACTGGGTATGTCTCTCAGGGAACTCAGAAATGGTTCCT
GCAGTGCTTAGCCTTGTATCCACACTGATATCCATACTGTATTTGTGTTA
TCATGAACCAGCATACACAGTTCTGAGTACTGTGCAGCTCCCAAGGGAGA
ATTGTCAACCTCAGATTCAGCAAAGGCTCTACAAGAATTATGTCACTTGT
ACACCACACTTTGTGGGTCTTAAGA

Query= MSMg01no525_i16.b1 MSMg01no525_i16.b1 CHROMAT_FILE:
MSMg01no525_i16.b1 PHD_FILE: MSMg01no525_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
         (646 letters)



>mm_chr1_27404182_27405227
          Length = 1046

 Score = 1214 bits (628), Expect = 0.0
 Identities = 640/644 (99%), Gaps = 2/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaagaggttctaacttagagaaataggaaaatagagggtctagacctcatatc 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaagaggtaataacttagagaaataggaaaatagagggtctagacctcatatc 263

                                                                       
Query: 64  ctgaaagcaggatcacaaagggaaataggatgagctttaggaaatcctgagggggactgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgaaagcaggatcacaaagggaaataggatgagctttaggaaatcctgagggggactgc 323

                                                                       
Query: 124 aggctattagcaaaactttatcatagtcaagtcactatcaggcaagagtaggcacttgca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggctattagcaaaactttatcatagtcaagtcactatcaggcaagagtaggcacttgca 383

                                                                       
Query: 184 agtcttcctgcctct-gccttagtgttgtgggaaggctgagggcaggaagtttgggagtt 242
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtcttcctgcc-cttgccttagtgttgtgggaaggctgagggcaggaagtttgggagtt 442

                                                                       
Query: 243 ctgaggctagaaaaccaagaagtaaagagcaagatcatgtgtgtctaccagaacatatgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgaggctagaaaaccaagaagtaaagagcaagatcatgtgtgtctaccagaacatatgt 502

                                                                       
Query: 303 ggtagctaggcaatacaggaggataataggtgaaggtgatgcctttatgagtaatgcagg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggtagctaggcaatacaggaggataataggtgaaggtgatgcctttatgagtaatgcagg 562

                                                                       
Query: 363 tgaggatagtccagtaggaacaaagacaaccattatgcttcctcctgttttagttggggt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgaggatagtccagtaggaacaaagacaaccattatgcttcctcctgttttagttggggt 622

                                                                       
Query: 423 gttttgggagagcacccacaaggctcccttctattatagatgaagtgttattgaaggtac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gttttgggagagcacccacaaggctcccttctattatagatgaagtgttattgaaggtac 682

                                                                       
Query: 483 caagtaaggttccttctgtaccacctggggtgttatgggagggtatctgcaagggttctt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caagtaaggttccttctgtaccacctggggtgttatgggagggtatctgcaagggttctt 742

                                                                       
Query: 543 tctgcagtagctggagtgttaaaggagagtacccagtatactttttttccattgcagctg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tctgcagtagctggagtgttaaaggagagtacccagtatactttttttccattgcagctg 802

                                                       
Query: 603 gggcattatgggtaacagcactggagtctaggagagagctggaa 646
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gggcattatgggtaacagcactggagtctaggagagagctggaa 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)