Query= MSMg01no525_m03.b1 MSMg01no525_m03.b1 CHROMAT_FILE:
MSMg01no525_m03.b1 PHD_FILE: MSMg01no525_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:29 2005
(536 letters)
>mm_chr1_130166253_130167189
Length = 937
Score = 953 bits (493), Expect = 0.0
Identities = 523/533 (98%), Gaps = 1/533 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttccggttgcctgatggttcttcccttac-aaccagtttccttctgacgctc 63
|||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct: 205 gaattcagttccggctgcctgatggttcttcctttacaaaccagtttccttctgatgctc 264
Query: 64 ctctggaagaagcgaggcagtttgctgcacgggtaagtttataaagatggctgtgtgggt 123
|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 265 ctctagaagaagcgaggcagtttgctgcacaggtaagtttataaagatggttgtgtgggt 324
Query: 124 tagtgaagccttgcagaagaagtttcaaagcagaacttgaaggatatagataaattttga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtgaagccttgcagaagaagtttcaaagcagaacttgaaggatatagataaattttga 384
Query: 184 cttagctccagaagaataacaggagacagccctgagatggaaggctttctggcttgtact 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 cttagctccagaagaataacaggagacagccctgagatggaaggctttctggcttgtatt 444
Query: 244 atacgtgatcacagtatacagcccactcaggaaagttctactatcatgcttagcaagagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atacgtgatcacagtatacagcccactcaggaaagttctactatcatgcttagcaagagg 504
Query: 304 aatgagaagcaagcggtctcctagatgtcagagctgagaatttgtcctagaaaggaaagg 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgagaagcaagcagtctcctagatgtcagagctgagaatttgtcctagaaaggaaagg 564
Query: 364 tttctctttgttttctgaaggttgatttgttttctattggttaaggcagaagatcagaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttctctttgttttctgaaggttgatttgttttctattggttaaggcagaagatcagaaa 624
Query: 424 tttacttcaaaagtgtgggattgctcaaaaatctaagtgacgtgaaatttgataacatag 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttacttcaaaagtgtggaattgctcaaaaatctaagtgacgtgaaatttgataacatag 684
Query: 484 gaagtaagacaggagtggtttccagtacttttttttttcttttagtcctgact 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaagtaagacaggagtggtttccagtacttttttttttcttttagtcctgact 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space: 487602
Effective search space used: 487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_m03.g1 MSMg01no525_m03.g1 CHROMAT_FILE:
MSMg01no525_m03.g1 PHD_FILE: MSMg01no525_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:29 2005
(578 letters)
>mm_chr1_130284847_130285825
Length = 979
Score = 553 bits (286), Expect = e-161
Identities = 301/308 (97%), Gaps = 6/308 (1%)
Strand = Plus / Minus
Query: 1 atagtgttgaaaagttaccaagcttttacaaagttcttaatac-actcatgagtgagaac 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 307 atagtgttgaaaagttaccaagcttttacaaagttcttaatacaactcatgagtgagaac 248
Query: 60 aaaaagtattataagaacgaaagagatttagccacatgtgtgcagaccatgccttaattc 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaaagtattgtaagaacgaaagagatttagccacatgtgtgcagaccatgccttaattc 188
Query: 120 caggcagaggccggtgtatctctgagtgtgagactaacctagtctacagagcaagttcta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 caggcagaggccggtgtatctctgagtgtgagactaacctagtctacagagcaagttcta 128
Query: 180 gaacaactggggctacacagagaaacactgcctcacccccaaaaagtgggtatc----tt 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 127 gaacaactggggctacacagagaaacactgcctcacccccaaaaagtgggtatcttagtt 68
Query: 236 agggtttctattcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggttt 295
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 67 agggtttctattcctgcacaaacatcatgaccaagaagc-agttggggaggaaagggttt 9
Query: 296 attcagct 303
||||||||
Sbjct: 8 attcagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space: 550392
Effective search space used: 550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
