Query= MSMg01no525_o04.b1 MSMg01no525_o04.b1 CHROMAT_FILE:
MSMg01no525_o04.b1 PHD_FILE: MSMg01no525_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:38 2005
(697 letters)
>mm_chr1_139893658_139894754
Length = 1097
Score = 1085 bits (561), Expect = 0.0
Identities = 597/609 (98%), Gaps = 2/609 (0%)
Strand = Plus / Minus
Query: 90 gcagaacaacattttatgtcagtgttcttagtggtaaatgttcaaatttcatttccaatg 149
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 897 gcagaacaacattttatgtcagtgttcttaacggtaaatgtttaaatttcatttccaatg 838
Query: 150 tagactaatttgtaagtttattaaattgggatgcaaacagatcttaggaaagga-aatat 208
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 837 tagactaatctgtaagtttattaaattgggatgcaaacagatcttaggaaa-gagaatat 779
Query: 209 ttggttcactgtaacaactcaggaatttttcatagtgctctcatagagtgatctcccact 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttggttcactgtaacaactcaggaatttttcatagtgctctcatagagtgatctcccact 719
Query: 269 tatttattgtaattagaaagtctgtatatcaaagaaaattgtctgttgtgattgctgcta 328
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 718 tatttgttgtaattagaaagtctggatatcaaagaaaattgtctgttgtgattgctgcta 659
Query: 329 aggtgacacctgataaaaacataagttctgtactttatagttcttgcatccccattttta 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aggtgacacctgataaaaacataagttctgtactttatagttcttgcatccccattttta 599
Query: 389 ttttccaacgcatcacccactttgtaatttaatatgctgaccattatatttcacatacac 448
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttttccaatgcattacccactttgtaatttaatatgctgaccattatatttcacatacac 539
Query: 449 tatgtatgcaaaaataggtctgtctaatgcaagatccattttagtgaaagaatgacagcg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tatgtatgcaaaaataggtctgtctaatgcaagatccattttagtgaaagaatgacagcg 479
Query: 509 aattccatctcatatcattatttaaccatgaaacattataacatcatttaaaggccctga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aattccatctcatatcattatttaaccatgaaacattataacatcatttaaaggccctga 419
Query: 569 gagaagaagatagtgattatgagtgctaggtttctaagacaagaaaatactcagagctta 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gagaagaagatagtgattatgagtgctaggtttctaagacaagaaaatactcagagctta 359
Query: 629 accatgataaaattgagggagccctcaagcccctttatctccaggaaggaaacagtgtga 688
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 358 accttgataaaattgagggaaccctcaagcccctttatctccaggaaggaaacagtgtga 299
Query: 689 tgaagtaat 697
|||||||||
Sbjct: 298 tgaagtaat 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_o04.g1 MSMg01no525_o04.g1 CHROMAT_FILE:
MSMg01no525_o04.g1 PHD_FILE: MSMg01no525_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:39 2005
(676 letters)
>mm_chr1_139888216_139889290
Length = 1075
Score = 1245 bits (644), Expect = 0.0
Identities = 668/676 (98%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 1 tttgttttcttttggagaaaatttttaaaatattttactgttgtttagacaattctagaa 60
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttttcttttggagaaaa-tttaaaaatattttactgttgtttagacaattctagaa 259
Query: 61 actacttacccgtggttgataatattagtaaatcttttactgagacaaaaccttgggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actacttacccgtggttgataatattagtaaatcttttactgagacaaaaccttgggaga 319
Query: 121 aagttggaaaattgttcagttttctgctgttataaatggcaaatgattgctgcatgtctt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 aagttggaaaatttttcagttttctgctgttataaatggcaaatgattgctgcatttctt 379
Query: 181 acccacaaagggtctgctaatacactaacaagtgcctggaaagacattttgaaacagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acccacaaagggtctgctaatacactaacaagtgcctggaaagacattttgaaacagtaa 439
Query: 241 ggtatgttcgagctcccagtatctgtgaggaactgacttattagagaagagagtgggtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtatgttcgagctcccagtatctgtgaggaactgacttattagagaagagagtgggtgt 499
Query: 301 ggcttgtcctgaggaggcttctggtctaacctgttccttcagttccatcagccaaaactg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggcctgtcctgaggaggcttctggtctaacctgttccttcagttccatcagccaaaactg 559
Query: 361 caagagcaatcttctttcccagagtctgacctggcagtctctctctactaatcaagaaag 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 caagagcaatcttctttcccagagtctgacctggcagtctccctctactaatcaagaaag 619
Query: 421 gcttaaattcaatgcttgcttttggatgacttgaactgagatgaagtttattcaataaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcttaaattcaatgcttgcttttggatgacttgaactgagatgaagtttattcaataaga 679
Query: 481 ttctagcaaaccactaccaatgattaacaattgaaccataacaaatcataaaatcattat 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 680 ttctagcaaaccactaccaatgattaacaattgaatcataacaaatcataaaatcattat 739
Query: 541 tatgtcttgagattaagatgacctttgagtaaaaagtgatcttgcatgtggtcagataat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tatgtcttgagattaagatgacctttgagtaaaaagtgatcttgcatgtggtcagataat 799
Query: 601 gactctaaagtctatttggggataatcagaagttaaaaagcaacttccctcctctgatta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gactctaaagtctatttggggataatcagaagttaaaaagcaacttccctcctctgatta 859
Query: 661 catatagctgttcaaa 676
|||||||||| |||||
Sbjct: 860 catatagctgctcaaa 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space: 709290
Effective search space used: 709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
