Query= MSMg01no525_p12.b1 MSMg01no525_p12.b1 CHROMAT_FILE:
MSMg01no525_p12.b1 PHD_FILE: MSMg01no525_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:45 2005
(455 letters)
>mm_chr1_137934960_137935814
Length = 855
Score = 797 bits (412), Expect = 0.0
Identities = 427/432 (98%)
Strand = Plus / Minus
Query: 24 cattgcaaacacatctcaaatcccctcattcatgtgagccgaccttgtgggaaaccatag 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cattgcaaacacatctcaaatcccctcattcatgtgagccgaccttgtgggaaaccatag 796
Query: 84 gcaagtttggtaggctctgtggtcatctgaaaaagaggggctgagtgaggaggttccctt 143
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gcaagtttggtaggctctgtagtcatctgaaaaagaggggctgagtgaggaggttccctt 736
Query: 144 gcctgaggtcatacagtgagtgtcagcagagctgatgctaggcccagagccttgaccctg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gcctgaggtcatacagtgagtgtcagcagagctgatgctaggcccagagccttgaccctg 676
Query: 204 tgttcctccgtgcttagttagttactagatcaagtgagcattcttgggcttgcctgcctc 263
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 675 tgttcctccgtgcttagttagttactagatcaagtgagcattcttgggcttgtctgcccc 616
Query: 264 cagattctattagggagagaattccagccagaggaaactctgagccaagtctcagtgggg 323
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cagattctgttagggagagaattccagccagaggaaactctgagccaagtctcagtgggg 556
Query: 324 tggtctagctagctgaagattggccaagatggctgggagtctctggtaactgtgacagga 383
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tggtctagctagctgaagactggccaagatggctgggagtctctggtaactgtgacagga 496
Query: 384 ggtcacattgaacagttgttgtagtgatgtgaacaggagccacccacattcactgtgtgc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggtcacattgaacagttgttgtagtgatgtgaacaggagccacccacattcactgtgtgc 436
Query: 444 ccacgtggaagg 455
||||||||||||
Sbjct: 435 ccacgtggaagg 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_p12.g1 MSMg01no525_p12.g1 CHROMAT_FILE:
MSMg01no525_p12.g1 PHD_FILE: MSMg01no525_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:45 2005
(560 letters)
>mm_chr1_137744800_137745759
Length = 960
Score = 1004 bits (519), Expect = 0.0
Identities = 555/575 (96%), Gaps = 16/575 (2%)
Strand = Plus / Plus
Query: 1 cattctgagaagagattctttgattccttgtttttctgcacctaaccacccatttttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cattctgagaagagattctttgattccttgtttttctgcacctaaccacccatttttctc 246
Query: 61 aactgagcatgccagtcataaatctcagcgcagagttgctgccagggctggggctggggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aactgagcatgccagtcataaatctcagcgcagagttgctgccagggctggggctggggc 306
Query: 121 tgaggctggggccagaatatggatatagcctttgagggagac-agagaaaccacttgtca 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 307 tgaggctggggccagaatatggatatagcctttgagggagacaagagaaaccacttgtca 366
Query: 180 tttcctacaaagttgagacagcctctagtgggctttcaggtggctgtccttacctagatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttcctacaaagttgagacagcctctagtgggctttcaggtggctgtccttacctagatg 426
Query: 240 ggatactcttctggaggttccatctgcgatgggccacttccatctgcacccatggggcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggatactcttctggaggttccatctgcgatgggccacttccatctgcacccatggggcag 486
Query: 300 gctgagcacaagcatttggaggaggggctacct-------------ctggattcctacca 346
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 487 gctgagcacaagcatttggaggaggggctacctctggattcctgtactggattcctacca 546
Query: 347 tcactcat-ggctacacacaggagtgtctacctttctccctaggaaaagcgtcgggcaga 405
| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 547 ttgctcatgggc-acacacaggagtgtctgcctttctccctaggaaaagcgtcgggcaga 605
Query: 406 gcgggccgagcagcagcgtattcgcaatgagcgggagaaggaaaggcagaaccgcctggc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcgggccgagcagcagcgtattcgcaatgagcgggagaaggaaaggcagaaccgcctggc 665
Query: 466 tgtgagtgaccctagcccggccactgagccctcagtcccatatctcttcacagacattgg 525
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 666 tgtgagtgaccctagcccggccactgagccctcggtcccatatctcttcacagacattgg 725
Query: 526 ttcaagtggcagcatttatcacatcacataaatcc 560
|||||||||||||||||||||||||||||||||||
Sbjct: 726 ttcaagtggcagcatttatcacatcacataaatcc 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
