BAC Information

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BAC

Clone NameMSMg01-526A11
Chromosome1 (Build37)
Map Location 136,461,746 - 136,468,732
singlet/doubletdoublet
Overlap geneJarid1b
Upstream geneSnrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik
Downstream geneLOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526A11.T7 (MSMg01no526_a11.b1)MSMg01-526A11.TJ (MSMg01no526_a11.g1)
ACCAG595722AG595723
length734735
length of high quality
(start - end)		694 (37 - 730)613 (67 - 679)
definitionCHROMAT_FILE: MSMg01no526_a11.b1 PHD_FILE: MSMg01no526_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:50 2005CHROMAT_FILE: MSMg01no526_a11.g1 PHD_FILE: MSMg01no526_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,461,746 - 136,462,436)(136,468,341 - 136,468,732)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAA
TCAAATATCCAAACAGCCACATAACAAATTGGGTGTGGTCCATATTCTCT
TGTAACTCTAGCACTGAGTGGGAAGTAGACAGGAGGATTGCTGGGGTTTC
CCTGGCTTCCAGCCCTTTGCAGAAAGTGATGGAGGACTGTACTTGGTGGC
CTCTGGTGCATGCTGTAGCACACACACATCATACATGCAGCACATTCACA
CATGTACACACATACTCTTCTTACATAAGACTTTGAAAATCATTTAAATC
TTTTTTCCTGGATATAAGAATACTTTTTTGATAAAGCCATAACTACCAGG
GTAGAAATGAAGTTTAAGTGTTTATTGTTTGTTTGTGCCTCTGTTTGTGT
GGAAGGAAGTGAGCAGGTGCACACGTGTCCTGCTGTCCTGTGGAGGTCAG
AGGACAGCTCTCAGGAGTTGTTTTCTCAGTCCACTGTGTTTCGGAGCCAG
GTGCTGTTTCTGCCAGGTGTGCTTCTGGCTAGCTGTGGAGAAGGCTTCAG
AGTGCTGTGTGACCACAGAGACATGCCACCGAATCTGGGTTTTATATGGG
TCCCAGGGATAAACCTCAGGTTGTCGGGCTTGTGCAACAAGTGAAAAGTA
TTTTCACTCACTGAGCCATCTAGCTCTCAGTCCCCTAACTTCTTTTTTTG
TTTGTTTGTTTTGAGTCAGGGTCTTTCTGTGTAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTACACAGAGAAACCCTGTC
TCAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAGCTGTACACAATAGCA
TGAATACTCTCCTGCATAAGATGAGATAACTGAGTTTGAAGCCAGCCTGG
GCTATAGAAAAATTAATCTTGGCACACCCCTTTAATCCCAGCACTCATGG
CAGTAGAGGCAATTGGATCTCTGAGTTCAAAGCCAGCCTAGTCTACAGAG
TTCCAGGGCAGCCAGAGCTATAGAGGAAAAAGTCTTGAAAAACTAAAAAG
ATAAATTAGTCTTTAAAAACAGAAAGAAGAGAAAGCCACTGGGTGCCGTG
GCTTCTCCTGAGGCAGAAGCAGACAGAGCTTCATGCCAGCAGGACGAGTT
TCAGACCAGACAGGGCTGCAAAGTTAGATCATGTCTCTATTTCTTTATTC
TTAATAAATGATCACTAACTAAAGTCCTTCATTGTCTAGGCTCAAATCCT
AGTTCCACCACACACTATCTCTTTCCTTCCAACTTCAGGATGTAAAGATG
GGTCAGCATTATTTTGCTTTTATAAGCAAGCTAAAAAAAACTCTGAAAAT
AGTCTGGGTCCAGGATAACGTAATAATGAAAATGTCACCAGAAGCCAGGA
AATTTTTATTTTACTAAATAACTTTTTCTCTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_a11.b1 MSMg01no526_a11.b1 CHROMAT_FILE:
MSMg01no526_a11.b1 PHD_FILE: MSMg01no526_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:50 2005
         (694 letters)



>mm_chr1_136461543_136462636
          Length = 1094

 Score = 1321 bits (683), Expect = 0.0
 Identities = 689/691 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaatcaaatatccaaacagccacataacaaattgggtgtggtccatattctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttaatcaaatatccaaacagccacataacaaattgggtgtggtccatattctc 263

                                                                       
Query: 64  ttgtaactctagcactgagtgggaagtagacaggaggattgctggggtttccctggcttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgtaactctagcactgagtgggaagtagacaggaggattgctggggtttccctggcttc 323

                                                                       
Query: 124 cagccctttgcagaaagtgatggaggactgtacttggtggcctctggtgcatgctgtagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagccctttgcagaaagtgatggaggactgtacttggtggcctctggtgcatgctgtagc 383

                                                                       
Query: 184 acacacacatcatacatgcagcacattcacacatgtacacacatactcttcttacataag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acacacacatcatacatgcagcacattcacacatgtacacacatactcttcttacataag 443

                                                                       
Query: 244 actttgaaaatcatttaaatcttttttcctggatataagaatacttttttgataaagcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actttgaaaatcatttaaatcttttttcctggatataagaatacttttttgataaagcca 503

                                                                       
Query: 304 taactaccagggtagaaatgaagtttaagtgtttattgtttgtttgtgcctctgtttgtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taactaccagggtagaaatgaagtttaagtgtttattgtttgtttgtgcctctgtttgtg 563

                                                                       
Query: 364 tggaaggaagtgagcaggtgcacacgtgtcctgctgtcctgtggaggtcagaggacagct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggaaggaagtgagcaggtgcacacgtgtcctgctgtcctgtggaggtcagaggacagct 623

                                                                       
Query: 424 ctcaggagttgttttctcagtccactgtgtttcggagccaggtgctgtttctgccaggtg 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 624 ctcaggagttgttttctcagtccactgtgttttggagccaggtgctgtttctgccaggtg 683

                                                                       
Query: 484 tgcttctggctagctgtggagaaggcttcagagtgctgtgtgaccacagagacatgccac 543
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 684 tgcttctggctagctgtggagaaggcttcagagtgcggtgtgaccacagagacatgccac 743

                                                                       
Query: 544 cgaatctgggttttatatgggtcccagggataaacctcaggttgtcgggcttgtgcaaca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cgaatctgggttttatatgggtcccagggataaacctcaggttgtcgggcttgtgcaaca 803

                                                                       
Query: 604 agtgaaaagtattttcactcactgagccatctagctctcagtcccctaacttcttttttt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agtgaaaagtattttcactcactgagccatctagctctcagtcccctaacttcttttttt 863

                                          
Query: 664 gtttgtttgttttgagtcagggtctttctgt 694
           |||||||||||||||||||||||||||||||
Sbjct: 864 gtttgtttgttttgagtcagggtctttctgt 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_a11.g1 MSMg01no526_a11.g1 CHROMAT_FILE:
MSMg01no526_a11.g1 PHD_FILE: MSMg01no526_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:50 2005
         (613 letters)



>mm_chr1_136467720_136468732
          Length = 1013

 Score =  758 bits (392), Expect = 0.0
 Identities = 392/392 (100%)
 Strand = Plus / Minus

                                                                        
Query: 222  ctagtctacagagttccagggcagccagagctatagaggaaaaagtcttgaaaaactaaa 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 ctagtctacagagttccagggcagccagagctatagaggaaaaagtcttgaaaaactaaa 954

                                                                        
Query: 282  aagataaattagtctttaaaaacagaaagaagagaaagccactgggtgccgtggcttctc 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  aagataaattagtctttaaaaacagaaagaagagaaagccactgggtgccgtggcttctc 894

                                                                        
Query: 342  ctgaggcagaagcagacagagcttcatgccagcaggacgagtttcagaccagacagggct 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  ctgaggcagaagcagacagagcttcatgccagcaggacgagtttcagaccagacagggct 834

                                                                        
Query: 402  gcaaagttagatcatgtctctatttctttattcttaataaatgatcactaactaaagtcc 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  gcaaagttagatcatgtctctatttctttattcttaataaatgatcactaactaaagtcc 774

                                                                        
Query: 462  ttcattgtctaggctcaaatcctagttccaccacacactatctctttccttccaacttca 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  ttcattgtctaggctcaaatcctagttccaccacacactatctctttccttccaacttca 714

                                                                        
Query: 522  ggatgtaaagatgggtcagcattattttgcttttataagcaagctaaaaaaaactctgaa 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  ggatgtaaagatgggtcagcattattttgcttttataagcaagctaaaaaaaactctgaa 654

                                            
Query: 582  aatagtctgggtccaggataacgtaataatga 613
            ||||||||||||||||||||||||||||||||
Sbjct: 653  aatagtctgggtccaggataacgtaataatga 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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