Query= MSMg01no526_a15.b1 MSMg01no526_a15.b1 CHROMAT_FILE:
MSMg01no526_a15.b1 PHD_FILE: MSMg01no526_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:51 2005
(634 letters)
>mm_chr1_26979470_26980504
Length = 1035
Score = 1180 bits (610), Expect = 0.0
Identities = 625/630 (99%), Gaps = 1/630 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaattaattcaaggtgacttttgtaccaagctaaggatttttacctgaagcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gaattccaaattaattcaaggtgacttttgtaccaagctaaggatttttacctgaagcca 775
Query: 65 tccgttttgagaaaagcaagaaaagtacatccgtagataattctgattttgttatgtgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tccgttttgagaaaagcaagaaaagtacatccgtagataattctgattttgttatgtgat 715
Query: 125 gaaatttgtaggtgtataattgaacaccctcctacatttttatcaatgaaaaacaaatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gaaatttgtaggtgtataattgaacaccctcctacatttttatcaatgaaaaacaaatga 655
Query: 185 tgttccctacatggtcagagattcaaagtctctgctggatactttgaataaacacacagt 244
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 654 tgttccctacatggccagagattcaaagtctctgctggatactttgaataaccacacagt 595
Query: 245 acatgccttcttacctttgtatagaagaagcacaccacacagccagtgcagaaatagcag 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 acatgccctcttacctttgtatagaagaagcacaccacacagccagtgcagaaatagcag 535
Query: 305 caaaacacttaaaattcaaatgctagatttttttattcagcacaaaagggcttaattgac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 caaaacacttaaaattcaaatgctagatttttttattcagcacaaaagggcttaattgac 475
Query: 365 aaaggttaaaaatgaaattctggggaaaatcaattagtcttatccagtaaaaatgaaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaaggttaaaaatgaaattctggggaaaatcaattagtcttatccagtaaaaatgaaata 415
Query: 425 ctagttgaatgtggtagctgataatgttgccagatatgcttatacatgaagaagtggctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctagttgaatgtggtagctgataatgttgccagatatgcttatacatgaagaagtggctt 355
Query: 485 aaagagcaactgactcaaattggaaaatag-aaactgagattaactttgcatctctgaat 543
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 354 aaagagcaactgactcaaattggaaaatagaaaactgagattaactttgcatctctgaat 295
Query: 544 tcgtgcgtttgttagatgcagttgttccaaaagtagagtcacttcgaacctggtggccat 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acgtgcgtttgttagatgcagttgttccaaaagtagagtcacttcgaacctggtggccat 235
Query: 604 tcagctttctttccttatccattttacctt 633
||||||||||||||||||||||||||||||
Sbjct: 234 tcagctttctttccttatccattttacctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_a15.g1 MSMg01no526_a15.g1 CHROMAT_FILE:
MSMg01no526_a15.g1 PHD_FILE: MSMg01no526_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:51 2005
(557 letters)
>mm_chr1_26806367_26807323
Length = 957
Score = 963 bits (498), Expect = 0.0
Identities = 540/560 (96%), Gaps = 15/560 (2%)
Strand = Plus / Plus
Query: 1 attggtgctttgtagacacttggtttcagtttgctgtgtttttatgtcgtttttcttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggtgctttgtagacacttggtttcagtttgctgtgtttttatgtcgtttttcttcca 260
Query: 61 agtcttttgtgtgctttgggtttttgtgtttggttgttgttgtttcttgtttttctatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcttttgtgtgctttgggtttttgtgtttggttgttgttgtttcttgtttttctatta 320
Query: 121 ttgtctttacttattattttctttttcttttttgacctagaggaaaaaaataaataaatt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttttacttattattttctttttcttttttgacctagaggaaaaaaataaataaatt 380
Query: 181 ggctgtgtagaaagcaagggaatatatgggagaaactgggaagaggagaaaacacgaaca 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ggctgtgtagaaaggaagggaatatatgggagaaactgggaagaggagaaaatacgaaca 440
Query: 241 aaatatattttatgaaaaaactgttttaagttaaaaacaaaacaaaacaaaacaaaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aaatatattttatgaaaaaactgttttaagttaaaaacaaaacaaaacaaagcaaaac-- 498
Query: 301 aacaaaactgtgtaacatccctttctgtgagaacttccactgtagcttccacct-gggct 359
|||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 499 --------tgtgtaacatccctttctgtgagaacttccactgtagcttccac-tagggct 549
Query: 360 aaccaaaattt-ccttcatcccatatgaaatccctggagaaattccaatttttagggttc 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaccaaaattttccttcatcccatatgaaatccctggagaaattccaatttttagggttc 609
Query: 419 attt-tttcttatagccaagataagggacacaattgtgtctttagaatatcttcattatt 477
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atttcttt-ttatagccaagataagggacacaattgtgtctttagaatatcttcattatc 668
Query: 478 gccaaaatggttataaaagtgttttggcaaaaactgtgcaaagattatctctatgatatg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gccaaaatggttataaaagtgttttggcaaaaactgtgcaaagattatctctatgatatg 728
Query: 538 tgaaaatctgaagagaaaaa 557
||||||||||||||||||||
Sbjct: 729 tgaaaatctgaagagaaaaa 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
