BAC Information

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BAC

Clone NameMSMg01-526D03
Chromosome1 (Build37)
Map Location 9,221,368 - 9,221,818
singlet/doubletsinglet
Overlap geneSntg1
Upstream geneLOC100039474, LOC620444, EG665007, LOC665103
Downstream geneLOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526D03.T7 (MSMg01no526_d03.b1)MSMg01-526D03.TJ (MSMg01no526_d03.g1)
ACCAG595848AG595849
length731735
length of high quality
(start - end)		580 (38 - 617)558 (66 - 623)
definitionCHROMAT_FILE: MSMg01no526_d03.b1 PHD_FILE: MSMg01no526_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:02 2005CHROMAT_FILE: MSMg01no526_d03.g1 PHD_FILE: MSMg01no526_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
ATCTTTCCAAGACTTTTATTATGAATGGGTGTTGGATTTTGTCAAATGCT
TTCTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
CATATACTGGATTACGTTGATGGATTTCTGTATATTGAACCATCCCTGCA
TCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGATGTGT
TCTTGGATTCGGTTAGCGAGAACTTTATTGAGGATTTTTGCATCGATATT
CATAAGGGAAATTGGTTTGAAGTTTTCTATCTTTGTTGGGTCTTTTTGTG
GTTTAGGTATCAGAAGTCTGTTTTTAATTCCACAAAACATACATTCTAGT
GTACATACTTGGGTGAATTGGATTAACCAGAAATAACCAAAAAATTAGAA
TGCAGGTGATTCCCGAATGTGATGCAGAACATTTATAAATATCAGGCAAA
AAAGAGGAGCTTAAGTTTTCCCCGGCAATCCTTATTTGAGGGGTGGATGG
AAAACTGTGATGTAATCAACAAAACAGAGCATCCACGTGTGGATTAGAGG
AAAAATTAATGAAGTATAGCAGAAGTGCCAAGGTGATAGAGAGTCAGAGG
CAGAGAACTGGCAACCTGAGTCCTGATCTTGTGGGAAACTGAAAGCTGTG
CAAAGGAGATTGACTTCAAGTATGACTCCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCACCTTTCTCCCACAAAACAGTTCAAGACAGAA
AAGTCACACAAATTTGTCCTTTATAAAAAATCTCACTCTCTAATAACAAC
TTCTGTCCTTGTTACTTTTCTGTTGCTATAATAAAACAGTAACTGAAACA
TTAGGAAAGAAAGGGATGTATTTAGCTAAAAGTTACAGTCTATTATTGAA
GAAAGACAAGGAAGAAATTTCATGTAGGAACTTAGAGGCAAGAACTAAGC
AGGGATTGTGGACGAACATTATTTACTGGCTTGCTCAGCTACTTTTCCTA
TACAGTCCAGGCTTATGTGCCGCTGGGCTTTTCAACATCATTGGTCAGTT
AAGAAAATGCTCCACTGGTCAATACAATGGAGATGATTCTTCAGTCGAGG
TTCCCTTTTCTCTGGTGACTACAGTTTGTATGACAAAAACTAAGCCTATA
GCAATTTTGTAAAAGATTCCGTTATGGAACTTGATCTGTAAAATTTTCTT
ATAGAAATGTTCTATCTGTGATATGTTTTGGTAACATCTTATCCAGTGTA
CACCATCTCTCTATACTGTAATTAATTATCTCAAATCTGGTCACTTTTTT
ATATTGAGTTTTTGCAATATTCTAGATCCCTTACTGTCAGTTTACTGATT
GTCTTAGTCAGGGTTTCTATTTCTGCACAACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_d03.b1 MSMg01no526_d03.b1 CHROMAT_FILE:
MSMg01no526_d03.b1 PHD_FILE: MSMg01no526_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:02 2005
         (580 letters)



>mm_chr1_9220841_9221820
          Length = 980

 Score =  841 bits (435), Expect = 0.0
 Identities = 447/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 130 ttgatggatttctgtatattgaaccatccctgcatccctgggatgaaacctacttggtca 189
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 978 ttgatggatttctgtatattgaaccatccctgcatccctgggatgaaacctagttggtca 919

                                                                       
Query: 190 ggatggatgattgttttgatgtgttcttggattcggttagcgagaactttattgaggatt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ggatggatgattgttttgatgtgttcttggattcggttagcgagaactttattgaggatt 859

                                                                       
Query: 250 tttgcatcgatattcataagggaaattggtttgaagttttctatctttgttgggtctttt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tttgcatcgatattcataagggaaattggtttgaagttttctatctttgttgggtctttt 799

                                                                       
Query: 310 tgtggtttaggtatcagaagtctgtttttaattccacaaaacatacattctagtgtacat 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgtggtttaggtatcagaagtctgtttttaattccacaaaacatacattctagtgtacat 739

                                                                       
Query: 370 acttgggtgaattggattaaccagaaataaccaaaaaattagaatgcaggtgattcccga 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 acttgggtgaattggattaaccagaaataaccaaaaaattagaatgcaggtgattcccga 679

                                                                       
Query: 430 atgtgatgcagaacatttataaatatcaggcaaaaaagaggagcttaagttttccccggc 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 atgtgatgcagaacatttataaatatcaggcaaaaaagaggagcttaagttttccccggc 619

                                                                       
Query: 490 aatccttatttgaggggtggatggaaaactgtgatgtaatcaacaaaacagagcatccac 549
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| 
Sbjct: 618 aatccttatttgaggggtggatagaaaactgtgatgtaatcaacaaaatagagcatccat 559

                                          
Query: 550 gtgtggattagaggaaaaattaatgaagtat 580
           |||||||||||||||||||||||||||||||
Sbjct: 558 gtgtggattagaggaaaaattaatgaagtat 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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