Query= MSMg01no526_f08.b1 MSMg01no526_f08.b1 CHROMAT_FILE:
MSMg01no526_f08.b1 PHD_FILE: MSMg01no526_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:13 2005
(643 letters)
>mm_chr1_46464934_46465979
Length = 1046
Score = 1035 bits (535), Expect = 0.0
Identities = 546/551 (99%), Gaps = 3/551 (0%)
Strand = Plus / Minus
Query: 96 cttagaggcacttataataaaacaatattgaagaaaaacacacagatccgttcaccaact 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 cttagaggcacttataataaaacaatattgaagaaaaacacacagatccgttcaccaact 987
Query: 156 aaagcaaggacagatttggagcatgcgtttaacaggatgccatggttccaggagactaca 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 aaagcaaggacagatttggagcatgcgtttaacaggatgccatggttccaggagactaca 927
Query: 216 tttcagtgaacttttcacctcgggactgcgtccaaatttttaggcctgccatgtgagtca 275
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 926 tttcagtgaacttttcacctcgggactgcgtccaaatttttaggcctgacatgtgagtca 867
Query: 276 ctactggagtaggtgtggcaggtcaccaagattctatttgcttttctttttcttgtgagt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ctactggagtaggtgtggcaggtcaccaagattctatttgcttttctttttcttgtgagt 807
Query: 336 catagtctcactggcttaagattgcaacccttacacctcaagctcttacactgctggcag 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 catagtctcactggcttaagattgcaacccttacacctcaagctcttacactgctggcag 747
Query: 396 ttcaagtgtgtatcgccctgcctggttgccacttcttgtgtgtgttgggggaggggtgct 455
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttcaagtatgtatcgccctgcctggttgccacttcttgtgtgtgttgggggaggggtgct 687
Query: 456 ttcttgttt---ttgttgttttagttttgccctcaagttttattagtttctgtgacccat 512
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttcttgtttttgttgttgttttagttttgccctcaagttttattagtttctgtgacccat 627
Query: 513 ctttaagatttttcttctttaactttaagcttaccttgtaaaagtttcgttttctgggtt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctttaagatttttcttctttaactttaagcttaccttgtaaaagtttcgttttctgggtt 567
Query: 573 gtattttccagttatagaactattttattcttctcaaaacaatccatttctctgttacac 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtattttccagttatagaactattttattcttctcaaaacaatccatttctctgttacac 507
Query: 633 atttctttcac 643
|||||||||||
Sbjct: 506 atttctttcac 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1046
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1036
Effective search space: 655788
Effective search space used: 655788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_f08.g1 MSMg01no526_f08.g1 CHROMAT_FILE:
MSMg01no526_f08.g1 PHD_FILE: MSMg01no526_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:13 2005
(595 letters)
>mm_chr1_46456610_46457604
Length = 995
Score = 1046 bits (541), Expect = 0.0
Identities = 582/599 (97%), Gaps = 8/599 (1%)
Strand = Plus / Plus
Query: 1 actcagagctaaaaaggatgtctttgcaggagactccttgagttttctcccagatttccc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 actcagagctaaaaaggatgtctttgctggagactccttgagttttctcccagatttccc 260
Query: 61 ttgttccgagcgctcctcagacactgtagtcctcactgctagcatctctgtgggaatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttccgagcgctcctcagacactgtagtcctcactgctagcatctctgtgggaatgtg 320
Query: 121 ttttgagacaaagctacttctgaaaaacggaatgttctggtgggtttggctccacagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgagacaaagctacttctgaaaaacggaatgttctggtgggtttggctccacagcac 380
Query: 181 cacagagatgctagcactgggctgcggacacacgtccagaagtgctgtttgcaattgtga 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagagatgctagcactgggctgcagacacacgtccagaagtgctgtttgcaattgtga 440
Query: 241 tagcaatcttactaaaaataagggcttttccccccagttcagagaggtgtgggtagaaga 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tagcaatcttactaaaaataagggctttttcccccagttcagagaggtgtgggtagaaga 500
Query: 301 caggctgccgctgtcctccagtctcctgaaggccattcaattcctgtaggatgctgatgt 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 caggctgccgctgtcctccagtctcctgaaggccattcatttcctgtaggatgctgatgt 560
Query: 361 ttcaaagcctccacatgaattatgggaatttccataaatattttttcacttcagcttttg 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaaaacctccacatgaattatgggaatttccataaatattttttcacttcagcttttg 620
Query: 421 ttcttagtggagagtgttgtctgtagttatcatttttctaaacagtatcttttaaaaatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcttagtggagagtgttgtctgtagttatcatttttctaaacagtatcttttaaaaatc 680
Query: 481 tgaaacatgaagctctgtgggtttttctgttttgttttgttttggtgttttgtttttggg 540
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 681 tgaaacatgaagctttgtgggtttttctgttttgttttgttttg---ttttgttttcgtg 737
Query: 541 tttt-ttttttgttt----gttttttgagtcaaatctttttttcctgctttgttcaagg 594
|||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 738 ttttgttttttgtttttttgttttttgaatcaaatctttttttcctgctttgttcaagg 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
