BAC Information

Click to search

BAC

Clone NameMSMg01-526F14
Chromosome1 (Build37)
Map Location 90,153,945 - 90,154,520
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526F14.T7 (MSMg01no526_f14.b1)MSMg01-526F14.TJ (MSMg01no526_f14.g1)
ACCAG595965AG595966
length731734
length of high quality
(start - end)		580 (37 - 616)646 (67 - 712)
definitionCHROMAT_FILE: MSMg01no526_f14.b1 PHD_FILE: MSMg01no526_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:14 2005CHROMAT_FILE: MSMg01no526_f14.g1 PHD_FILE: MSMg01no526_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATC
CTGTGACAGGGGAGGCGTTCCAGTGATTCATTGGGGCTCACCTCATTCTT
TTGGCAGCACCTCTGGAGACTAGTGCTGGGCAGGCAATGGAGTGTGTTCA
AATTCCACATAAACCCTTATGCATGCCTTTGGGGTAAACCCCCTCCCCCC
TGAGCTAGAGTCATTATGCCCAGTCTCTTGAGTGTTACAAGTCTCGAGGA
AGGAGGGACTGCCCTGATGGAAGGATCCAGACAGCTCGGTGGAAACCTAG
GAATTGGGATTGACCATGGGGAATGGCTGGGGTTTTGCTGGGCTTCCTGA
TGGCAGCCCACTTGTGCCTCTTGATGTCAGGAAAGCGAGCTGCTACGGTT
GAAGGCCTTTGTTCTCTTTGGGAAGCTTACAAAAGTGGTTGGGATTTCCA
AGAAGCATTTCTTCAAAGGGGAGGTGAAGAGAGGCTGGGTCTCCCTCCTG
CTGCACTGCCAGGACCCCTGCCCCAGCGTGGCCCAGGTAACACGCCCCTC
CCTCCCCATATCCTATGATCTGGGACCACAGTGCCAAAAGGAAAAGGGGA
ACCTTGCATCTGCTGGCTCAGTGAGCTACTAGCTCTTGTACTCTCCACCC
GCCCCATTCCTTCTGCAGACTGAGACAAGGACCATCCCAGGGACTCCTAA
AGAGGTCTTATAAAAGGCTTCTCTGTGAGGA

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGAAGAAGCAG
CTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAG
TTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCA
GGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAG
TGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGGCAATGCGCAGAC
TCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGT
CTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTAC
AGATTAAAGAACTTGCCGAGTCGGTCCGTAAATACGGAACCAATGCTAAT
TTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGC
CGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATA
TGGAATGGAGAGCTCTTTGGCATGAAGCTGCACAAGCGCAGGCCTGAGCA
AACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGACTTGTT
AACGGGTCAGGGAGCTTATTCTGCTGATCAGACAAACTACCATTGTGGAG
CTTATGCCCAGATTTCTTCCACGGCTATTAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_f14.b1 MSMg01no526_f14.b1 CHROMAT_FILE:
MSMg01no526_f14.b1 PHD_FILE: MSMg01no526_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:14 2005
         (580 letters)



>mm_chr1_90153741_90154720
          Length = 980

 Score = 1106 bits (572), Expect = 0.0
 Identities = 575/576 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcctgtgacaggggaggcgttccagtgattcattggggctcacctcattctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcctgtgacaggggaggcgttccagtgattcattggggctcacctcattctt 264

                                                                       
Query: 65  ttggcagcacctctggagactagtgctgggcaggcaatggagtgtgttcaaattccacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggcagcacctctggagactagtgctgggcaggcaatggagtgtgttcaaattccacat 324

                                                                       
Query: 125 aaacccttatgcatgcctttggggtaaaccccctcccccctgagctagagtcattatgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacccttatgcatgcctttggggtaaaccccctcccccctgagctagagtcattatgcc 384

                                                                       
Query: 185 cagtctcttgagtgttacaagtctcgaggaaggagggactgccctgatggaaggatccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtctcttgagtgttacaagtctcgaggaaggagggactgccctgatggaaggatccag 444

                                                                       
Query: 245 acagctcggtggaaacctaggaattgggattgaccatggggaatggctggggttttgctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagctcggtggaaacctaggaattgggattgaccatggggaatggctggggttttgctg 504

                                                                       
Query: 305 ggcttcctgatggcagcccacttgtgcctcttgatgtcaggaaagcgagctgctacggtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcttcctgatggcagcccacttgtgcctcttgatgtcaggaaagcgagctgctacggtt 564

                                                                       
Query: 365 gaaggcctttgttctctttgggaagcttacaaaagtggttgggatttccaagaagcattt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaggcctttgttctctttgggaagcttacaaaagtggttgggatttccaagaagcattt 624

                                                                       
Query: 425 cttcaaaggggaggtgaagagaggctgggtctccctcctgctgcactgccaggacccctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcaaaggggaggtgaagagaggctgggtctccctcctgctgcactgccaggacccctg 684

                                                                       
Query: 485 ccccagcgtggcccaggtaacacgcccctccctccccatatcctatgatctgggaccaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccccagcgtggcccaggtaacacgcccctccctccccatatcctatgatctgggaccaca 744

                                               
Query: 545 gtgccaaaaggaaaaggggaaccttgcatctgctgg 580
           |||||||||||||||||| |||||||||||||||||
Sbjct: 745 gtgccaaaaggaaaagggaaaccttgcatctgctgg 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |