Query= MSMg01no526_g21.b1 MSMg01no526_g21.b1 CHROMAT_FILE:
MSMg01no526_g21.b1 PHD_FILE: MSMg01no526_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:21 2005
(489 letters)
>mm_chr1_39907984_39908871
Length = 888
Score = 903 bits (467), Expect = 0.0
Identities = 482/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 3 taatgtgctttgacctaagagcgggtgaccagcctggagtaagagcgggaactgagcaga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taatgtgctttgacctaagagcgggtgaccagcctggagtaagagcgggaactgagcaga 262
Query: 63 gttctgctgactcattgtcttgtgtcttcccacactgcctgtgagaaaggaccaggggat 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 gttctgctgactcattgtcttgtgtcttcccacactgcctgtgagaaaggac-aggggat 321
Query: 123 ggaggctcaggtgggccctgctggttagccagtgcgccatctatttgtcttgtctccact 182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 322 ggaggctcaggtgggccctgctggttagccagtacgccatctatttgtcttgtctccact 381
Query: 183 gcctcagtggtacctgattctgacctgggctcaccacaattcacccagtggctgcccttg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcctcagtggtacctgattctgacctgggctcaccacaattcacccagtggctgcccttg 441
Query: 243 ctctttccagtcttcttaccctacctgagacaagatacccatgtctcttgtcacatctct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctctttccagtcttcttaccctacctgagacaagatacccatgtctcttgtcacatctct 501
Query: 303 gcttagacaggaacttcctgccatcctgttgacagtccagactccgagaatagcaaggat 362
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 502 gcttagacaggaacttcctgccatcctgttgacagtccagactccaagaatagcaaggat 561
Query: 363 ctccataaatacaacacaccccacactctgacatccctcccaggctgcggggtggagctc 422
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 562 ctccataaatacaacacaccccacactctgacatccctcccagcctggggggtggagctc 621
Query: 423 agtggtagtgcatacacttagaatacacagggcaagcttactgagattcagataaatgag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agtggtagtgcatacacttagaatacacagggcaagcttactgagattcagataaatgag 681
Query: 483 atgaatg 489
|||||||
Sbjct: 682 atgaatg 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space: 420562
Effective search space used: 420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_g21.g1 MSMg01no526_g21.g1 CHROMAT_FILE:
MSMg01no526_g21.g1 PHD_FILE: MSMg01no526_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:21 2005
(559 letters)
>mm_chr1_40080951_40081909
Length = 959
Score = 961 bits (497), Expect = 0.0
Identities = 509/513 (99%)
Strand = Plus / Minus
Query: 1 caaggtctcgctcagggtcttgccgactccagaggtcagtgatcccagctcacactgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 caaggtctcgctcagggtcttgccgactccagaggtcagtgatcccagctcacactgcct 608
Query: 61 ctaccagctcagaagagaagtcctgcctaaggtcatgaaatagacctggctgctgccacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctaccagctcagaagagaagtcctgcctaaggtcatgaaatagacctggctgctgccacc 548
Query: 121 agagcggacggaggcaaagaacacctgcaacacaatgagaggacacagtcagcagccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agagcggacggaggcaaagaacacctgcaacacaatgagaggacacagtcagcagccatt 488
Query: 181 cactatctcctgatgcccaaccccagataggcccaaacaaagtgtctccttggtttattt 240
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cactatctcctggtgcccaaacccagataggcccaaacaaagtgtctccttggtttattt 428
Query: 241 tagaatgcatcatcactgccagtggaccacaagccactgtacacagcagccacaagtgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tagaatgcatcatcactgccagtggaccacaagccactgtacacagcagccacaagtgcc 368
Query: 301 cagacgccataagggagctttaccttgtcattgcgttcacacaggaactttagtctctga 360
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cagacgccgtaagggagccttaccttgtcattgcgttcacacaggaactttagtctctga 308
Query: 361 gcccttttgtgcataaatacaccatccaagtgaccagtttccacagatcgtatctctatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcccttttgtgcataaatacaccatccaagtgaccagtttccacagatcgtatctctatt 248
Query: 421 gccttctctccccagcccattgtctgattcgaccggatatatgctttgagagagagagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gccttctctccccagcccattgtctgattcgaccggatatatgctttgagagagagagag 188
Query: 481 agagagagagagagagagagagagagagagaga 513
|||||||||||||||||||||||||||||||||
Sbjct: 187 agagagagagagagagagagagagagagagaga 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
