BAC Information

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BAC

Clone NameMSMg01-526K21
Chromosome1 (Build37)
Map Location 176,534,555 - 176,672,586
singlet/doubletdoublet
Overlap geneFmn2
Upstream geneAI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7, Fh1, Kmo, Opn3, Chml, Wdr64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526K21.T7 (MSMg01no526_k21.b1)MSMg01-526K21.TJ (MSMg01no526_k21.g1)
ACCAG596214AG596215
length734737
length of high quality
(start - end)		696 (37 - 732)669 (65 - 733)
definitionCHROMAT_FILE: MSMg01no526_k21.b1 PHD_FILE: MSMg01no526_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:40 2005CHROMAT_FILE: MSMg01no526_k21.g1 PHD_FILE: MSMg01no526_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,671,896 - 176,672,586)(176,534,555 - 176,535,223)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGGATCCGCGGAATTCCAT
GACATTTACCAATCAGATTCACTTGTCAACATATGCAAATTATTTAAAAC
AATGTCTGTAATGACCAATACATGTGAAGTGAATGTCTTCCTTACGTTTG
GGCATTGAAGATCTGAAAGATCTTTAAGTGAGCCAACCACTGTTTTATAA
TGTTTTGACATGATATCAAGATGCAGAAAATATATTCTTGCAGCTTTTCA
AAATCGTATGCCCCTAAATCATGGTAAGTGGAATGAAGTGAGTCTTGCTA
GTTCACAGTAATAATTCCTTTTGATGTCTACCGAACCCAGCTCTTGTTTC
AGTGCCTGAGAAAGTTGGCTTCAAAAAATTAAAACCAAAACCACTTTAAT
CCAATGTGGCAGGAGATTGATCCATACCAAAGAAATAAAACATAAAAACA
GATCTCCTTACTAAACCTAATAACCATGCTACAATAATAAAGTCAAATTA
GAATAACAGGCAATGCTTGGGACTTCTCTACTATCCATTATTTTCATGTA
ATTTTTAAGCTACAGGGACTTGTATATTGAAACTCTAATCAGCTTTGATA
AACAGTCTAATTGGAGATCAAAGGAAGTGCATTAAAGGCCAAATTTCAAC
TCTGAATGTAGAGTCAACAATGCAAGGAGCCAGGGCAGATTTCCTTTTGT
ATTGCAGGAAGAAGAAGAAGAAGAAGAAGAAGAA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTAACTCTGCTCCTTCCAGGTGCCACATAACTAGT
TATGGTGCTTATTATAGATTTATTACTGGAACTTGGCTGTATCACTATTT
CCTCTACCATTTCTTAACCCTACTTCTTACTGTGCCATACACTTGAAAAA
AATCTTTGAACCTTAAAGAATATGTATACTTCTATATTATCAGTTCCTTA
TTTTTCCAACTTTTTAATTATTTAAGTGTGTTACTTATCTCTATTTTTAA
AATATGAATGAAATACATAAAAATACATGTTTCCACTGAATATATATAGA
TAGGCCTAGTGTTACAACCATATAATCTCAGCTACTCAAAGGCTGATGCA
GGGAGATTACAAGCTCAAAGGCTGTCTGGACTGCAGAGAAAAGTCAAAGT
CAGCCTGGAAAACGTAGTGGAAACGGCCTCAAAATGAAAGACAAATCAGT
ATAGCAAGTGCTAATGGTCCAGCGTGCATGAGGCCCTTGCTTCTGTATCT
AGTGCCATAAAACAAAGTAAATGAGTGAACTTAATACTTAAAGTGTTCAG
CTCAGTCCTAAGTTCTTCCCCTTCCTCACAAAGCACCACTCACTATCCCC
CGTTCTCTAAACTGTACTTGTAATGCAACATTTAGCAGGTTTAGTTTATC
ATTGATTTTATGCTGTTTTAAGCCACACAATGCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_k21.b1 MSMg01no526_k21.b1 CHROMAT_FILE:
MSMg01no526_k21.b1 PHD_FILE: MSMg01no526_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:40 2005
         (696 letters)



>mm_chr1_176671716_176672811
          Length = 1096

 Score = 1336 bits (691), Expect = 0.0
 Identities = 691/691 (100%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccatgacatttaccaatcagattcacttgtcaacatatgcaaattatttaaaaca 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gaattccatgacatttaccaatcagattcacttgtcaacatatgcaaattatttaaaaca 812

                                                                       
Query: 66  atgtctgtaatgaccaatacatgtgaagtgaatgtcttccttacgtttgggcattgaaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 atgtctgtaatgaccaatacatgtgaagtgaatgtcttccttacgtttgggcattgaaga 752

                                                                       
Query: 126 tctgaaagatctttaagtgagccaaccactgttttataatgttttgacatgatatcaaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tctgaaagatctttaagtgagccaaccactgttttataatgttttgacatgatatcaaga 692

                                                                       
Query: 186 tgcagaaaatatattcttgcagcttttcaaaatcgtatgcccctaaatcatggtaagtgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgcagaaaatatattcttgcagcttttcaaaatcgtatgcccctaaatcatggtaagtgg 632

                                                                       
Query: 246 aatgaagtgagtcttgctagttcacagtaataattccttttgatgtctaccgaacccagc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aatgaagtgagtcttgctagttcacagtaataattccttttgatgtctaccgaacccagc 572

                                                                       
Query: 306 tcttgtttcagtgcctgagaaagttggcttcaaaaaattaaaaccaaaaccactttaatc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcttgtttcagtgcctgagaaagttggcttcaaaaaattaaaaccaaaaccactttaatc 512

                                                                       
Query: 366 caatgtggcaggagattgatccataccaaagaaataaaacataaaaacagatctccttac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caatgtggcaggagattgatccataccaaagaaataaaacataaaaacagatctccttac 452

                                                                       
Query: 426 taaacctaataaccatgctacaataataaagtcaaattagaataacaggcaatgcttggg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 taaacctaataaccatgctacaataataaagtcaaattagaataacaggcaatgcttggg 392

                                                                       
Query: 486 acttctctactatccattattttcatgtaatttttaagctacagggacttgtatattgaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acttctctactatccattattttcatgtaatttttaagctacagggacttgtatattgaa 332

                                                                       
Query: 546 actctaatcagctttgataaacagtctaattggagatcaaaggaagtgcattaaaggcca 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 actctaatcagctttgataaacagtctaattggagatcaaaggaagtgcattaaaggcca 272

                                                                       
Query: 606 aatttcaactctgaatgtagagtcaacaatgcaaggagccagggcagatttccttttgta 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatttcaactctgaatgtagagtcaacaatgcaaggagccagggcagatttccttttgta 212

                                          
Query: 666 ttgcaggaagaagaagaagaagaagaagaag 696
           |||||||||||||||||||||||||||||||
Sbjct: 211 ttgcaggaagaagaagaagaagaagaagaag 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_k21.g1 MSMg01no526_k21.g1 CHROMAT_FILE:
MSMg01no526_k21.g1 PHD_FILE: MSMg01no526_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:41 2005
         (669 letters)



>mm_chr1_176534355_176535423
          Length = 1069

 Score = 1294 bits (669), Expect = 0.0
 Identities = 669/669 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaactctgctccttccaggtgccacataactagttatggtgcttattatagatttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaactctgctccttccaggtgccacataactagttatggtgcttattatagatttatt 260

                                                                       
Query: 61  actggaacttggctgtatcactatttcctctaccatttcttaaccctacttcttactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggaacttggctgtatcactatttcctctaccatttcttaaccctacttcttactgtg 320

                                                                       
Query: 121 ccatacacttgaaaaaaatctttgaaccttaaagaatatgtatacttctatattatcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatacacttgaaaaaaatctttgaaccttaaagaatatgtatacttctatattatcagt 380

                                                                       
Query: 181 tccttatttttccaactttttaattatttaagtgtgttacttatctctatttttaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttatttttccaactttttaattatttaagtgtgttacttatctctatttttaaaata 440

                                                                       
Query: 241 tgaatgaaatacataaaaatacatgtttccactgaatatatatagataggcctagtgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatgaaatacataaaaatacatgtttccactgaatatatatagataggcctagtgtta 500

                                                                       
Query: 301 caaccatataatctcagctactcaaaggctgatgcagggagattacaagctcaaaggctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaccatataatctcagctactcaaaggctgatgcagggagattacaagctcaaaggctg 560

                                                                       
Query: 361 tctggactgcagagaaaagtcaaagtcagcctggaaaacgtagtggaaacggcctcaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctggactgcagagaaaagtcaaagtcagcctggaaaacgtagtggaaacggcctcaaaa 620

                                                                       
Query: 421 tgaaagacaaatcagtatagcaagtgctaatggtccagcgtgcatgaggcccttgcttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaagacaaatcagtatagcaagtgctaatggtccagcgtgcatgaggcccttgcttct 680

                                                                       
Query: 481 gtatctagtgccataaaacaaagtaaatgagtgaacttaatacttaaagtgttcagctca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatctagtgccataaaacaaagtaaatgagtgaacttaatacttaaagtgttcagctca 740

                                                                       
Query: 541 gtcctaagttcttccccttcctcacaaagcaccactcactatcccccgttctctaaactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcctaagttcttccccttcctcacaaagcaccactcactatcccccgttctctaaactg 800

                                                                       
Query: 601 tacttgtaatgcaacatttagcaggtttagtttatcattgattttatgctgttttaagcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacttgtaatgcaacatttagcaggtttagtttatcattgattttatgctgttttaagcc 860

                    
Query: 661 acacaatgc 669
           |||||||||
Sbjct: 861 acacaatgc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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