Query= MSMg01no526_l24.b1 MSMg01no526_l24.b1 CHROMAT_FILE:
MSMg01no526_l24.b1 PHD_FILE: MSMg01no526_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:46 2005
(597 letters)
>mm_chr1_13039398_13040394
Length = 997
Score = 1056 bits (546), Expect = 0.0
Identities = 582/594 (97%), Gaps = 2/594 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaagtttgttgccttccagggctaataagacctggtctcgaaacaacacacac 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaagtttgaggccttccagggctaataagacctggtctcgaaacaacacacac 264
Query: 65 aaaaagcctgtcttctccttctctcatctttccccaccagtctagacttgaggccagttc 124
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 acaaagcctgtcttctccttctctcatctctccccaccagtctagacttgaggccagttc 324
Query: 125 tgaacagtgactgtggtccctggcaaatctcatctgtgtgtttccaacagttcagaggag 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaacagtcactgtggtccctggcaaatctcatctgtgtgtttccaacagttcagaggag 384
Query: 185 tctgtgagttgaccctctgtttactactcagccaaagcagggtgtcacgtcaagctctca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgtgagttgaccctctgtttactactcagccaaagcagggtgtcacgtcaagctctca 444
Query: 245 ctaacgaggaagtataaagccccgagctcatgtttctacagtttggttacccgagtgacc 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctatcgaggaagtataaagccccgagctcatgtttctacagtttggttacccgagtgacc 504
Query: 305 ttcgctcttcttccccacactggctatttcatagctcctcttgattgctccccttctaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcgctcttcttccccacactggctatttcatagctcctcttgattgctccccttctaaa 564
Query: 365 gcgatggacactctaagttcctgaacccatctttttgtgaacgagggtgtaagtcttcag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcgatggacactctaagttcctgaacccatctttttgtgaacgagggtgtaagtcttcag 624
Query: 425 gtgctgcatcaccctgaagcactatgctgtctctaggatgctctcagcatcaggacagaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgctgcatcaccctgaagcactatgctgtctctaggatgctctcagcatcaggacagaa 684
Query: 485 tcaaacccgtttccctagcacagagccacccaggaccagaaataccagcttcacgaaaga 544
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 685 tcaaacccgtttccctagcacagagccacccaggaccagaaataacagcttcacaaaaga 744
Query: 545 actctg-tctgtacacatgggtctcaaggaagaagtgagattctttccccctca 597
||| | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 gctc-gctctgtacacatgggtcccaaggaagaagtgagattctttccccctca 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_l24.g1 MSMg01no526_l24.g1 CHROMAT_FILE:
MSMg01no526_l24.g1 PHD_FILE: MSMg01no526_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:46 2005
(519 letters)
>mm_chr1_13233970_13234888
Length = 919
Score = 1002 bits (518), Expect = 0.0
Identities = 518/518 (100%)
Strand = Plus / Minus
Query: 2 gtatgctctgggctggagtgtacttgtggagcggagggctgaacatggcagctagtgaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtatgctctgggctggagtgtacttgtggagcggagggctgaacatggcagctagtgaga 660
Query: 62 gcacgccaaggacaaatgtacatagcatggcacaaatgtattctagggtctttatttatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gcacgccaaggacaaatgtacatagcatggcacaaatgtattctagggtctttatttatt 600
Query: 122 tctgttatatttatttagtgtctaaaggttatttgcagattttcattctgctaattctct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tctgttatatttatttagtgtctaaaggttatttgcagattttcattctgctaattctct 540
Query: 182 tggttgtctgaaggaagtattttggtaagcattttctgaaattcagacaaatcttaaatc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tggttgtctgaaggaagtattttggtaagcattttctgaaattcagacaaatcttaaatc 480
Query: 242 cttaaggtacaaattaaattactaagagatgaatgtctttatgcttctgtctcttttatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cttaaggtacaaattaaattactaagagatgaatgtctttatgcttctgtctcttttatt 420
Query: 302 cattatccttttgtaattgtaagcacaaaaacgatctttgcagtgaatttgaaatcattc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cattatccttttgtaattgtaagcacaaaaacgatctttgcagtgaatttgaaatcattc 360
Query: 362 catgatttcaggagctttctaattttgactgaggttctcattgcatgactttgctataca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 catgatttcaggagctttctaattttgactgaggttctcattgcatgactttgctataca 300
Query: 422 gtacttaactttctctgctttgttcttaagctgttacatgcagacaccaaatagcaccca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtacttaactttctctgctttgttcttaagctgttacatgcagacaccaaatagcaccca 240
Query: 482 cctagtcaagtttcagatcgcacttgaccatttgtaat 519
||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cctagtcaagtttcagatcgcacttgaccatttgtaat 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
