BAC Information

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BAC

Clone NameMSMg01-527G13
Chromosome1 (Build37)
Map Location 69,186,789 - 69,187,263
singlet/doubletsinglet
Overlap genenone
Upstream geneErbb4, LOC667842
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527G13.T7 (MSMg01no527_g13.b1)MSMg01-527G13.TJ (MSMg01no527_g13.g1)
ACCAG596770AG596771
length761760
length of high quality
(start - end)		536 (69 - 604)500 (76 - 575)
definitionCHROMAT_FILE: MSMg01no527_g13.b1 PHD_FILE: MSMg01no527_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:38 2005CHROMAT_FILE: MSMg01no527_g13.g1 PHD_FILE: MSMg01no527_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCCTTTACGATCAGTTGACTCATAGCACTAAATATCTACAAA
CCCAAGGTTCTTTCATCGCACAAGATAATAGGTCTGCATGTTCTAGGTTT
AGTGCATGGGGCATCTTTGGAGAAGCTATGTTCTGCATGTCTACTATACA
AGAGTACAGTGCTGAAAATGACTGTGTTCTGCAAAGTCACTCATTAAAAA
CAACAAGGCAAGTCACCCTTAAAACTTACCAAATTTAGTGGCTAGAAGAA
AAATAACTCTTAAGAATCACACGTGGACGTGCGTGCGCGTGCGTGCGTGC
GTGCGTGCGTGCGTGCGTGTGTGTGTGTGTAAAAGTACACTAGGAATCAT
GAGAAGGATAAAAGAGGTTTAAAATTAACGAGGAGGGGGGCATAAGAGAA
TAACTGGATATTTGTTATTAAAGTAAAAAGATTACTAATGAAAGGGAGAG
GAAGAAGAGAGACAGAAGGCATATGGGGGACAAATAGGGACACATTGAGC
TTTGTGTATGTGTGTGTGTTGTGTGTGTGTTGTGTGTGTGTGTGTTGTGT
GTGNNTNANNNNNNNTNNNNNTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTNTTN
NTTTTNNTTTTTTTTTTTTTTTTTNTCNTNNNNNNTTTTTTTTTTTTTTT
TTTTTTTTTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
AAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGCGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCC
CAAAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCAGAAAGA
AGGACACATGCTCCACTATATTCATAGCAGACTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCTGCTATTAAAAAGAATGAAT
TTATGAAATTCCTANGGCAAATGGGCTGGGNACCTGAGGGCATCCTCCCT
GAGTGAAGGTAAACCCAATCCCCAAAAAAACCCCCCTTTTATAGGGCCCC
CCCCGGGAAAAAGGGGAATTATTCCCCCCAAAAATTTTTTTAAACCCCCC
AAAAAAAAAAAAATAATTTTTTTTTTTTTAAAAAACTAGTGGGATTTTAC
AAATAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_g13.b1 MSMg01no527_g13.b1 CHROMAT_FILE:
MSMg01no527_g13.b1 PHD_FILE: MSMg01no527_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:38 2005
         (536 letters)



>mm_chr1_69186328_69187263
          Length = 936

 Score =  899 bits (465), Expect = 0.0
 Identities = 471/475 (99%), Gaps = 4/475 (0%)
 Strand = Plus / Minus

                                                                       
Query: 65  tctgcatgttctaggtttagtgcatggggcatctttggagaagctatgttctgcatgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tctgcatgttctaggtttagtgcatggggcatctttggagaagctatgttctgcatgtct 877

                                                                       
Query: 125 actatacaagagtacagtgctgaaaatgactgtgttctgcaaagtcactcattaaaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 actatacaagagtacagtgctgaaaatgactgtgttctgcaaagtcactcattaaaaaca 817

                                                                       
Query: 185 acaaggcaagtcacccttaaaacttaccaaatttagtggctagaagaaaaataactctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 acaaggcaagtcacccttaaaacttaccaaatttagtggctagaagaaaaataactctta 757

                                                                       
Query: 245 agaatcacacgtggacgtgcgtgc----gcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgt 300
           ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 756 agaatcacacgtggacgtgcgtgcgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgt 697

                                                                       
Query: 301 gtgtgtgtgtgtaaaagtacactaggaatcatgagaaggataaaagaggtttaaaattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gtgtgtgtgtgtaaaagtacactaggaatcatgagaaggataaaagaggtttaaaattaa 637

                                                                       
Query: 361 cgaggaggggggcataagagaataactggatatttgttattaaagtaaaaagattactaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cgaggaggggggcataagagaataactggatatttgttattaaagtaaaaagattactaa 577

                                                                       
Query: 421 tgaaagggagaggaagaagagagacagaaggcatatgggggacaaatagggacacattga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgaaagggagaggaagaagagagacagaaggcatatgggggacaaatagggacacattga 517

                                                                  
Query: 481 gctttgtgtatgtgtgtgtgttgtgtgtgtgttgtgtgtgtgtgtgttgtgtgtg 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gctttgtgtatgtgtgtgtgttgtgtgtgtgttgtgtgtgtgtgtgttgtgtgtg 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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