BAC Information

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BAC

Clone NameMSMg01-527J02
Chromosome1 (Build37)
Map Location 95,267,757 - 95,268,192
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7
Downstream geneTmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527J02.T7 (MSMg01no527_j02.b1)MSMg01-527J02.TJ (MSMg01no527_j02.g1)
ACCAG596890AG596891
length944724
length of high quality
(start - end)
---435 (82 - 516)
definitionCHROMAT_FILE: MSMg01no527_j02.b1 PHD_FILE: MSMg01no527_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:51 2005CHROMAT_FILE: MSMg01no527_j02.g1 PHD_FILE: MSMg01no527_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAATNTAAACGTCGGNNACCACNTCCGCCCGCATCCCGCCCTTCTACT
CGTCGCCGGTGGAGCCCCTAAACTTTTTTAATATTTTCTACCCGACCGCG
CACCTTACCCTCCCACACGAATGGGNTGGGCACCCCGCGAAAAAAGAAAA
AAAATATTGGCGACCCGGGGGAGCCCCGCGGCCTTTGAAAAAAAAAGGGG
GAAAAAAACGTCCCCCCATTTTTTTTCCCCTCCTCCCCGAGGAAAAGAGG
GGGGAAACCCGCGGGGAAAAATTCCGGGGTGTGTCCCCCCCAACGGGGGG
AAAAAGGGGCCCCCCCGCCACGCGGGGTGGGGGGGGGGCCCCTCCCCCCA
CAAGATGGGGGNGGGGGGGGGGGGGGGAAAGGGGGGGGGAGCAAACAACA
ACTAGGGGGGGGGCGGGGGGAGGAAAAGAAAACCCCCCCGGGTNNGGGGC
CCTCCTTCCCCTTCCCTCCCCCCCAAAAAAAAAANNNTAAAACAAAAGAA
CAAAAAAATAAAAAACAAAGGGGGGGGGGGGGGAATCCTCTGGGGGGAAT
ACCCCCCCCCCCCGCCGCGGGGCGGGGGGGCGGGCAAAAAAATAAAAAAA
CACCCCCCCGCCAAAGAAAAATAAAAACCCACCCCCCCCCAAAAGGGAGG
AGAGAGGGGGGGGTGGTGTGCTTTTTTTTGGTTAAAGAAAAGAAAACACC
ACCCCNNNNNCCCCCCCCCCCCCCCCCAACCCACCCACCCAAGNNNAAAG
GGAGGTGGGGGTGGGTGTGGTGGGNNCGGNNGTGGGGGGGGGGGCGCGCG
CGCCGCGCCCGCCCGNCGACGGCGAACCGGTANANAACGGGGGGGGGGGG
NGNNCCCGGCGGCGGTANTGAGGGCGGTCGGCAGNNATCGGCGGGCGGCG
GGGGCGGAGTGGGTTGCCGCATTGGCGGTGTGTGGCACCGGAAG
AAGTCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATCCACCTGCCTCCG
CCTCACGAATATTGGAATTAAAGGTGTGTACCACCATTTATTTATTGTTT
GTTTGTTTATTTATTTATTTGAGACAGGATCTTGTTATGTAGGCCAGGGT
GCCTCTTGAGTGCTGGGATCATAGGCATACACAAGTGCCTGGCTCCAGTC
TGTTTTTTGGTAGCAGTCAGAGTCCGCTGCTGGCAGTGGGATGGCAGGAA
AGCCCTCAGGGATATCTGCATGCAGAATGTATTTATTCTTGTAGAAATGT
GTGTGCGCACACACATGCAAGCATGCACACTAACACATACATGAGAAGAA
CAGCTTGTAAGAGTCACTCTTCCCCTGCCTCCATGTGGGTTTCCAGGGGC
TGAAGTCAGGTGATCAGGCTTGGTCGGTGGGGAGTGTCTTAACACGCTAA
GCCAGAATCTCACCAGCTCCCCTGCGCTAACTGTCTCTGTATGCCACACC
AATCCCATGTGAAGCTGAAGGTTTTATCAAGCTTCTATTTTTTTCCCAAA
GGAAAGGGAAAGGGCCCCCGCGGGGGAAAAGGGGGGGCTTTTGTGTAAAA
AATTCCAGGGGGGGTCCCGGGGAAAAAAAAAAAACCCCCCCCCGAAGATT
TTTTTTTAAATAAAATATTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_j02.g1 MSMg01no527_j02.g1 CHROMAT_FILE:
MSMg01no527_j02.g1 PHD_FILE: MSMg01no527_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:51 2005
         (435 letters)



>mm_chr1_95267514_95268349
          Length = 836

 Score =  828 bits (428), Expect = 0.0
 Identities = 434/436 (99%), Gaps = 1/436 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagatccacctgcctccgcctcacgaatattggaattaaaggtgtgtaccaccatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agagatccacctgcctccgcctcacgaatattggaattaaaggtgtgtaccaccatttat 620

                                                                       
Query: 61  ttattgtttgtttgtttatttatttatttgagacaggatcttgttatgtaggccagggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttattgtttgtttgtttatttatttatttgagacaggatcttgttatgtaggccagggtg 560

                                                                       
Query: 121 cctcttgagtgctgggatcataggcatacacaagtgcctggctccagtctg-ttttttgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 559 cctcttgagtgctgggatcataggcatacacaagtgcctggctccagtctgtttttttgg 500

                                                                       
Query: 180 tagcagtcagagtccgctgctggcagtgggatggcaggaaagccctcagggatatctgca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 tagcagtcagagtccgctgctggcagtgggatggcaggaaagccctcagggatatcttca 440

                                                                       
Query: 240 tgcagaatgtatttattcttgtagaaatgtgtgtgcgcacacacatgcaagcatgcacac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgcagaatgtatttattcttgtagaaatgtgtgtgcgcacacacatgcaagcatgcacac 380

                                                                       
Query: 300 taacacatacatgagaagaacagcttgtaagagtcactcttcccctgcctccatgtgggt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taacacatacatgagaagaacagcttgtaagagtcactcttcccctgcctccatgtgggt 320

                                                                       
Query: 360 ttccaggggctgaagtcaggtgatcaggcttggtcggtggggagtgtcttaacacgctaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttccaggggctgaagtcaggtgatcaggcttggtcggtggggagtgtcttaacacgctaa 260

                           
Query: 420 gccagaatctcaccag 435
           ||||||||||||||||
Sbjct: 259 gccagaatctcaccag 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)