CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCTCACCTTACGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGC
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATTCCCAAGATATAAGGCACAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGATGTGTGGACACTATGCCCCTCCCTAGAATTGGGAAC
AAACACCCATGGAAGGAGTTACAGA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACAATTGGTAACCCAGAGGCTGGGTT
GTAGCCCAATGTTGATGGCTGAATGAAAAGGAAGAAATAACTAGAAAAGG
ACTTGACTATTCCTCAGAGTGGTAGAGAAGAGAGTCTATTGTAGATAAAA
GGGGAGTATAGCCTGGGGTGGGGGCAGGGACATCCGGGGGAGTACAAAGC
CTTGTGAGGAGAGGGAAGAGCAGCTGATAACCAGCCTGGGCCAAGAAAGT
AGACAAAGGGTCACCTAGAAGGTTGGAATATATAGGGAAGGGCAGCTGGA
GGAAAGTCAGTTAGTTTATCCTCTTGGAGAGTTCAGGGTAGGGGCAGGGT
ATGCCAGTCCAGTCTGGAGGATCCTGTAACAGGTAGGGACTGAGGAATGC
ATGGAGAACTTGGCAGCCAGCACCTCAGCCCTTTGTCCCGGGTTTGAGAT
TTAACAGTGGTGAGATGTAGCCATGGTCCTTGCCTGGCCAGGCCAACACA
ATCTGAGGTGCTTGCCTGTCTCCCTGGCTGTCCCTTTGTGACGAGACCAC
AGCATTCATTTCTTCTGGAGTAGATAGGAGTGGTCTGCCTTCTATCTCCA
CTGACTAAGAGAATGTGACGTGACGTTCTTTCATGTGGTGTTTCTGGAAG
CTCCAGCCTCTCTGGCCCCTGCTTGTTCACACCTCTGACTCACTGTTACT
CCCAGAAGTGTGAGTACAGCCTTGCCTTAGTTAATTATGGTGTGCCC

Query= MSMg01no527_m20.g1 MSMg01no527_m20.g1 CHROMAT_FILE:
MSMg01no527_m20.g1 PHD_FILE: MSMg01no527_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:12 2005
         (547 letters)



>mm_chr1_40414932_40415878
          Length = 947

 Score = 1042 bits (539), Expect = 0.0
 Identities = 545/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaattggtaacccagaggctgggttgtagcccaatgttgatggctgaatgaaaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaattggtaacccagaggctgggttgtagcccaatgttgatggctgaatgaaaaggaa 260

                                                                       
Query: 61  gaaataactagaaaaggacttgactattcctcagagtggtagagaagagagtctattgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaataactagaaaaggacttgactattcctcagagtggtagagaagagagtctattgta 320

                                                                       
Query: 121 gataaaaggggagtatagcctggggtgggggcagggacatccgggggagtacaaagcctt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gataaaaggggagtatagcctggggtgggggcagggacatccaggggagtacaaagcctt 380

                                                                       
Query: 181 gtgaggagagggaagagcagctgataaccagcctgggccaagaaagtagacaaagggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaggagagggaagagcagctgataaccagcctgggccaagaaagtagacaaagggtca 440

                                                                       
Query: 241 cctagaaggttggaatatatagggaagggcagctggaggaaagtcagttagtttatcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagaaggttggaatatatagggaagggcagctggaggaaagtcagttagtttatcctc 500

                                                                       
Query: 301 ttggagagttcagggtaggggcagggtatgccagtccagtctggaggatcctgtaacagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggagagttcagggtaggggcagggtatgccagtccagtctggaggatcctgtaacagg 560

                                                                       
Query: 361 tagggactgaggaatgcatggagaacttggcagccagcacctcagccctttgtcccgggt 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagggactgaggaatgcacggagaacttggcagccagcacctcagccctttgtcccgggt 620

                                                                       
Query: 421 ttgagatttaacagtggtgagatgtagccatggtccttgcctggccaggccaacacaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgagatttaacagtggtgagatgtagccatggtccttgcctggccaggccaacacaatc 680

                                                                       
Query: 481 tgaggtgcttgcctgtctccctggctgtccctttgtgacgagaccacagcattcatttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaggtgcttgcctgtctccctggctgtccctttgtgacgagaccacagcattcatttct 740

                  
Query: 541 tctggag 547
           |||||||
Sbjct: 741 tctggag 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)