BAC Information

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BAC

Clone NameMSMg01-527N20
Chromosome1 (Build37)
Map Location 90,195,535 - 90,384,331
singlet/doubletdoublet
Overlap geneTrpm8, Spp2
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneGlrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527N20.T7 (MSMg01no527_n20.b1)MSMg01-527N20.TJ (MSMg01no527_n20.g1)
ACCAG597117AG597118
length792792
length of high quality
(start - end)		645 (44 - 688)609 (76 - 684)
definitionCHROMAT_FILE: MSMg01no527_n20.b1 PHD_FILE: MSMg01no527_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:17 2005CHROMAT_FILE: MSMg01no527_n20.g1 PHD_FILE: MSMg01no527_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,195,535 - 90,196,176)(90,383,708 - 90,384,331)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGGATCTGGGGAGATGGCTCAGTTGGTAAAGTGCTTGCTGAGCAAG
CATGAAGACTTGAGTTCAATCCCTGCCACCCATCTAAAAATCCAGAACTC
ACAATCCCAGAGCTGGGGAGGCAGAGACAGGGAGGATCCTGAGACTCTTT
CTCCAGTCAGCTTAATCTAACCAGGAGGCTCCAGGTGTCAAAAAACCAAA
CCAAACCAAACCAAAAAACCAAGCAAGCAAAAACCAGTAAGGACAGCTGA
CCTCTGTCCTACACAAATGCTCACACACACATGCAGATGTACATACTGAT
ATACATTATATATAACCTATACATACTTAATAATAAAATCTATCTGAATT
TTTGGATGAGATGTCTCACCCAAAGAGACCGGTATCTTAAAACTGGTATC
TACTCCTCACTAATATAACTTGATTTTGTTGTGCAGGCTTCCTTGTGTGG
AAGCTTGCAGCCCCTAGCTCAGCCCTTAGAGCATCTAGTGCCTGAGTCGG
GGCAAGGCTACAGGGGCTAGCATACTATGACAGCATCTCATCCCCTCTCT
TGTTGGAAAATGTCTTTCCCATCAGGTTACTTTTGGGGCAAATATTTAAT
TCCCATCTGCAATGGCCTGGCTATTTTCATCTCTGACATTCGAACCCTTC
TGCCCTCGGGGCCCTCTGTGGGATGGCAATGCTACTAATGACCCTAATTG
TGCATGGGTACCCTCCTTCCTCCATAACATCATCACCCTTGG

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCATAGAAGGAGAAGGTTGGAG
TATCCCCAAAACAAGCAGGCTAGCAATATCTGTGTGCTCTGGGTTTGATT
AAGAGACCCTGCCTTGACAAACATAGAGAAGAGCATTGATTCCTAACATC
AGTGTCAATCTCGGGTCTCCACATACACAGGTGCATATCTACCCATCAAC
ACATGAAGAAAACATACCTACACATACATACGCACCACACACATAAACAT
GAGAATAGAAAAAAACAAAAGGAAGACTTCAACAGGAAAACATCTACAAG
AATATGGTATTAAAATGTACTAAGTTATAAGGGTAGCACAATATCTAAAT
AATCATACACCTATATGATAGAACTATGTGCAATAATTTTAAAATGTTTG
TCAAGGTTTTAGTAATACTCAATTAAGACACCATTTCAATGTCAAGAGTA
ATAATAGGTAATTCTAAGTTTTGTTTTTTCTTTCCTGTGTGTCTGTCTGT
ATGTCTGTATGTTTGTATGTGTGTATACATATACATTATACATATACATT
ATACATATACATATACATACCTGAGCAAGTATATATATATGTATATATAT
ATATATATATATGAAGAAAAGTCTACCTTTTACAAAAATCAATTCTAGAA
ACAAAATACATGATATGTAAATGTAACTCCTTACCCCCTCTTTTTTACTG
CAGCATAGATTTTTACAATGAGTGCTGTGTGTTCTTGTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_n20.b1 MSMg01no527_n20.b1 CHROMAT_FILE:
MSMg01no527_n20.b1 PHD_FILE: MSMg01no527_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:17 2005
         (645 letters)



>mm_chr1_90195332_90196376
          Length = 1045

 Score = 1195 bits (618), Expect = 0.0
 Identities = 636/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatggatctggggagatggctcagttggtaaagtgcttgctgagcaagcatgaa 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatttatggatctggggagatggctcagttggtaaagtgcttgctgagcaagcatgaa 263

                                                                       
Query: 64  gacttgagttcaatccctgccacccatctaaaaatccagaactcacaatcccagagctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacttgagttcaatccctgccacccatctaaaaatccagaactcacaatcccagagctgg 323

                                                                       
Query: 124 ggaggcagagacagggaggatcctgagactctttctccagtcagcttaatctaaccagga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 ggaggcagagacagggaggatcctgagactctttctccagtcagcttaacctaaccagga 383

                                                                       
Query: 184 ggctccaggtgtcaaaaaaccaaaccaaaccaaaccaaaaaaccaagcaagcaaaaacca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctccaggtgtcaaaaaaccaaaccaaaccaaaccaaaaaaccaagcaagcaaaaacca 443

                                                                       
Query: 244 gtaaggacagctgacctctgtcctacacaaatgctcacacacacatgcagatgtacatac 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtaaggacagctgacctctgccctacacaaatgctcacacacacatgcagatgtacatac 503

                                                                       
Query: 304 tgatatacattatatataacctatacatacttaataataaaatctatctgaatttttgga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgatatacattatatataacctatacatacttaataataaaatctatctgaatttttgga 563

                                                                       
Query: 364 tgagatgtctcacccaaagagaccggtatcttaaaactggtatctactcctcactaatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgagatgtctcacccaaagagaccggtatcttaaaactggtatctactcctcactaatat 623

                                                                       
Query: 424 aacttgattttgttgtgcaggcttccttgtgtggaagcttgcagcccctagctcagccct 483
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacttgattttgctgtgcaggcttccttgtgtggaagcttgcagcccctagctcagccct 683

                                                                       
Query: 484 tagagcatctagtgcctgagtcggggcaaggctacaggggctagcatactatgacagcat 543
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tagagcagctagtgcctgagtcggggcaaggctacaggggctagcatactatgacagcat 743

                                                                       
Query: 544 ctcatcccctctcttgttggaaaatgtctttcccatcaggttacttttggggcaaatatt 603
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cccatcccctctcttgttggaaaatgtctttcccatcaggttacttttggggcaaatatt 803

                                                     
Query: 604 taattcccatctgcaatggcctggctattttcatctctgaca 645
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taattcccatctgcaatggcctggctattttcatctctgaca 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_n20.g1 MSMg01no527_n20.g1 CHROMAT_FILE:
MSMg01no527_n20.g1 PHD_FILE: MSMg01no527_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:17 2005
         (609 letters)



>mm_chr1_90383518_90384526
          Length = 1009

 Score = 1031 bits (533), Expect = 0.0
 Identities = 594/629 (94%), Gaps = 27/629 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcatagaaggagaaggttggagtatccccaaaacaagcaggctagcaatatctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 caggcatagaaggagaaggttggagtatccccaaaacaagcaggctagcaatatctgtgt 755

                                                                       
Query: 61  gctctgggtttgattaagagaccctgccttgacaaacatagagaagagcattgattccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gctctgggtttgattaagagaccctgccttgacaaacatagagaagagcattgattccta 695

                                                                       
Query: 121 acatcagtgtcaatctcgggtctccacatacacaggtgcatatctacccatcaacacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acatcagtgtcaatctcgggtctccacatacacaggtgcatatctacccatcaacacatg 635

                                                                       
Query: 181 aagaaaacatacctacacatacatacgcaccacacacataaacatgagaatagaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aagaaaacatacctacacatacatacgcaccacacacataaacatgagaatagaaaaaaa 575

                                                                       
Query: 241 caaaaggaagacttcaacaggaaaacatctacaagaatatggtattaaaatgtactaagt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 caaaaagaagacttcaacaggaaaacatctacaagaatatggtattaaaatgtactaagt 515

                                                                       
Query: 301 tataagggtagcacaatatctaaataatcatacacctatatgatagaactatgtgcaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tataagggtagcacaatatctaaataatcatacacctatatgatagaactatgtgcaata 455

                                                                       
Query: 361 attttaaaatgtttgtcaaggttttagtaatactcaattaagacaccatttcaatgtcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 attttaaaatgtttgtcaaggttttagtaatactcaattaagacaccatttcaatgtcaa 395

                                                                       
Query: 421 gagtaataataggtaattctaagttttgttttttctttcctgtgtgtctgtctgtatgtc 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gagtaatgataggtaattctaagttttgttttttctttcctgtgtgtctgtctgtatgtc 335

                                                                       
Query: 481 tgtatgtttgtatgtgtgtatacatatacattatacatatacattatac----------a 530
           ||||||||||||||||||||||||||||||||||||||||||   ||||          |
Sbjct: 334 tgtatgtttgtatgtgtgtatacatatacattatacatatac---atacctgagcaagta 278

                                                                       
Query: 531 tatacatatacatacctgagcaagtatatata----tatgtata--------tatatata 578
           |||| ||||| |||  || |   |||||||||    ||||||||        ||||||||
Sbjct: 277 tataaatatatatatatgtg--tgtatatatatatgtatgtatatatatatgtatatata 220

                                        
Query: 579 tatatatatgaagaaaagtctacctttta 607
           |||||||||||||||||||||||||||||
Sbjct: 219 tatatatatgaagaaaagtctacctttta 191


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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