Query= MSMg01no527_o06.b1 MSMg01no527_o06.b1 CHROMAT_FILE:
MSMg01no527_o06.b1 PHD_FILE: MSMg01no527_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:19 2005
(520 letters)
>mm_chr1_189355154_189356073
Length = 920
Score = 953 bits (493), Expect = 0.0
Identities = 514/521 (98%), Gaps = 2/521 (0%)
Strand = Plus / Plus
Query: 1 cacggtggagcgcagtgaaccaaagtgcatactcccagcctgcatctggccaagggacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacggtggagcgcagtgaaccaaagtgcatactcccagcctgcatctggccaagggacag 260
Query: 61 gatgattggctcacacagattttatgcaacagtagctgctggcctcctgagaacaaggcc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgattggctcgcacagattttatgcaacagtagctgctggcctcctgagaacaaggcc 320
Query: 121 ctctgggagttcagatgcctgaggtggctttctgcctccacatcattgttatcaaccccc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ctctgggagttcagatgcctgaggtggcttcctgcctccacatcattgttatcaaccccc 380
Query: 181 tcatcggtagcaatcagtgggattttggagtttgccagcaggtcacatgtagctgggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcggtagcaatcagtgggattttggagtttgccagcaggtcacatgtagctgggcct 440
Query: 241 ctagcatggctcagtgcgcgcataagctctggtgagaccaatttaaatgcaccattaatc 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagcatggctcagtgcacgcataagctctggtgagaccaatttaaatgcaccattaatc 500
Query: 301 ctctgatggtcacgagtagctataccccgtgggttccaatggcagggctaccagtgcctg 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ctctgatggtcacgagtagctataccccgtgggttccaatggcagggccaccagtgcctg 560
Query: 361 gggtttcatgatttagcaatgaagccagaagactcagctctgcattttggttcttttcca 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gggtttcatgatttagcaatgaagccagaagactcagctctgcatcttggttcttttcca 620
Query: 421 cagcattgttccagattcaatttgttaatcttcctccccccccc-ccacccgccccctgc 479
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 621 cagcattgttccagattcaatttgttaatcttcc-cccccccccgccacccgccccctgc 679
Query: 480 aggagtcctttcattggctccacctgtgagtgccagacaag 520
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggagtcctttcattggctccacctgtgagtgccagacaag 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_o06.g1 MSMg01no527_o06.g1 CHROMAT_FILE:
MSMg01no527_o06.g1 PHD_FILE: MSMg01no527_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:19 2005
(670 letters)
>mm_chr1_189504233_189505303
Length = 1071
Score = 1249 bits (646), Expect = 0.0
Identities = 664/670 (99%), Gaps = 1/670 (0%)
Strand = Plus / Minus
Query: 1 ttctcccatttcattttcctctccatctggaatgactggaaaatacactcctttgctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ttctcccatttcattttcctctccatctggaatgactggaaaatacactcctttgctcag 811
Query: 61 ttcggctcaaactcaagtcataggggataggaaggctggaaggtaaggtctacagtgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ttcggctcaaactcaagtcataggggataggaaggctggaaggtaaggtctacagtgaga 751
Query: 121 aggggaggaacaacagtcaaggaacccaagaaagtagtgatcaacggttttaacacaata 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aggggaggaacaacagtcagggaacccaagaaagtagtgatcaacggttttaacacaata 691
Query: 181 gaaacacggggagagctgaagaattagtgtgatttttt-taaattttctgagccacactt 239
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 690 gaaacacggggagagctgaagaattagtgtgattttttaaaaattttctgagccacactt 631
Query: 240 tatcccaaagtatcaggaaacttaattttatataaaaatgaaggatgaagaaatatcaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tatcccaaagtatcaggaaacttaattttatataaaaatgaaggatgaagaaatatcaag 571
Query: 300 gtcagatctcatacaaggttattatcgtaactacaaaccagaggaagaagctgaataaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtcagatctcatacaaggttattatcgtaactacaaaccagaggaagaagctgaataaca 511
Query: 360 tccctggtggcaataaaaccatttcaaaagaaacatgttggaaagaaatcattaaaaata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tccctggtggcaataaaaccatttcaaaagaaacatgttggaaagaaatcattaaaaata 451
Query: 420 taaaggatgccgccataagattctaaagctctaaagtgtagtaacagggctgaagagaat 479
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 450 taaaggatgccgccataagattcaaaagctctaaagtgtactaacagggctgaagagaat 391
Query: 480 cagaataaaaacaaaagttgatttcaaaaatacccaactaacctagaaacaaacagaaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cagaataaaaacaaaagttgatttcaaaaatacccaactaacctagaaacaaacagaaca 331
Query: 540 gagacgcttactaaacacaaaagttaaaaagaaaaagtgctttttaaatctcaaagaaat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gagacgcttactaaacacaaaagttaaaaagaaaaagtgctttttaaatctcaaagaaat 271
Query: 600 gaaaagaggagagagattaaaagagatgaatcatggagacaaagagacagatacatttgg 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 270 gaaaagaggagagagattaaaagagatgaatcatggagacaaagagacagaaacatttgg 211
Query: 660 atggtaagag 669
||||||||||
Sbjct: 210 atggtaagag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
