BAC Information

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BAC

Clone NameMSMg01-528E02
Chromosome1 (Build37)
Map Location 176,513,628 - 176,540,067
singlet/doubletdoublet
Overlap geneFmn2
Upstream geneLOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7, Fh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528E02.T7 (MSMg01no528_e02.b1)MSMg01-528E02.TJ (MSMg01no528_e02.g1)
ACCAG597415AG597416
length746745
length of high quality
(start - end)		423 (51 - 473)663 (83 - 745)
definitionCHROMAT_FILE: MSMg01no528_e02.b1 PHD_FILE: MSMg01no528_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:48 2005CHROMAT_FILE: MSMg01no528_e02.g1 PHD_FILE: MSMg01no528_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,539,649 - 176,540,067)(176,513,628 - 176,514,249)
sequence
NNNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGTCCAATAGAGAGGCTTCATTGGCCGGCAAGGCTCGAT
CAGCTGCTTCCTAGCCACTCTGTCCTGATTCATCCCTAATCCAAACAAGC
CAGTGGGCAATGGAGGAAAAAGAAATCCACACCCTTGAGGTGCTGCTGGT
AAAGTGCTACTCCCAACTTGTGAGGAGTGTGGAGGACCTGAGCCAGGCAA
CAGTGGGGGTGGGGGGATGCCTGCCCCAGGGGGAGGTGGGGCGGGAGGTG
GAACCCCCATACCTGGTAGAGGAGGTGGTGGAGGAATAGCAACTCCAGGT
AGAGCAGGAGGAGGGGGTATGCCTGATCCAGGTAAAGGAGGGGGAGGGGG
TATTCCCACTCCTGGAAGTGGAGGGGGTGGGGGTATTCCCACTCCAGGAA
GAGGAGGAGGAGGGGGTATGCCCACTCCTGGATAATGAGGAGGATGTGGT
AGTCCCACTCTATGGAACGTAAGTATATGACGGATCCCCCATCATCCTAA
GTACCCGAATTTGTCTTTTCCTTTTTCCGAACTTCATCTATTTACCTTTT
CTTCCCTTTTCGACGGTTTGCCCTTTTTCTCGCCCCTTTTTGCCTTCATG
TCTTTCTCTCCCTTTGTTCTTTTCCTTTGTTTTCCCGTTTTTACTGCCAC
TTTACCGTTTTACGAATTATCCCTACCTTTTTTTTACCTCCTCCTC

NNNCCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACCATTAAGTTCTTC
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAAAAGAATTTTGACAGGACAGTGCCTGAAAAT
TCAACATGTGAATGTAGATATTTTTAGTTTCAAAAAGGGAAGGACTCAAG
TAAAGATTTTTATCCTGTAGTATGCGTGATTGTTTTAGGCTAAAAATGCC
ATTGGCTGATATTCATATGTAAGGGTGCAATTGTTTTAAGCAGTTTTCTT
GATAGATAGCCCTTGGAGCAATGCTTTCTATTCTTTCATTCATTCGCATC
AAAAGCTGGCATAATCTTTCAATGTCCCTACTCTATGTTTTTCAACTTTT
CTGACTGCGTTGCTAAAACTTTTCTTTACTATTTGGCAATGCTTTAGAAG
CATTGTCCATCGCTGGGTTACTGAAGGACTGGGCTGAGAACAAATTGAAA
GAGGGCCCCTGAATTTGAGTTTGACCAGGATAGAATTGGGGCCAGAGTCA
GGAGAGGATGACTTACTTGGCTTCTCTATAGATTAACACAGCTTGCAAAA
ATGCCCGGGCAAGGGATTTTAATACAATGCCTTTTCTCCTTTTAAAATGT
GCATTTATGAAGATGATAAGGGTACGTAGAAAGTAATTTAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_e02.b1 MSMg01no528_e02.b1 CHROMAT_FILE:
MSMg01no528_e02.b1 PHD_FILE: MSMg01no528_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:48 2005
         (423 letters)



>mm_chr1_176539445_176540267
          Length = 823

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtccaatagagaggcttcattggccggcaaggctcgatcagctgcttcctag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattcttgtccaatagagaggcttcattggccggcaaggctcgatcagctgcttcctag 564

                                                                       
Query: 65  ccactctgtcctgattcatccctaatccaaacaagccagtgggcaatggaggaaaaagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccactctgtcctgattcatccctaatccaaacaagccagtgggcaatggaggaaaaagaa 504

                                                                       
Query: 125 atccacacccttgaggtgctgctggtaaagtgctactcccaacttgtgaggagtgtggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atccacacccttgaggtgctgctggtaaagtgctactcccaacttgtgaggagtgtggag 444

                                                                       
Query: 185 gacctgagccaggcaacagtgggggtggggggatgcctgccccagggggaggtggggcgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gacctgagccaggcaacagtgggggtggggggatgcctgccccagggggaggtggggcgg 384

                                                                       
Query: 245 gaggtggaacccccatacctggtagaggaggtggtggaggaatagcaactccaggtagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaggtggaacccccatacctggtagaggaggtggtggaggaatagcaactccaggtagag 324

                                                                       
Query: 305 caggaggagggggtatgcctgatccaggtaaaggagggggagggggtattcccactcctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caggaggagggggtatgcctgatccaggtaaaggagggggagggggtattcccactcctg 264

                                                                      
Query: 365 gaagtggagggggtgggggtattcccactccaggaagaggaggaggagggggtatgccc 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaagtggagggggtgggggtattcccactccaggaagaggaggaggagggggtatgccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_e02.g1 MSMg01no528_e02.g1 CHROMAT_FILE:
MSMg01no528_e02.g1 PHD_FILE: MSMg01no528_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:48 2005
         (663 letters)



>mm_chr1_176513388_176514450
          Length = 1063

 Score = 1203 bits (622), Expect = 0.0
 Identities = 622/622 (100%)
 Strand = Plus / Plus

                                                                       
Query: 41  agagagagagagagagagagagagagagagagagagagagagagagaaaagaattttgac 100
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agagagagagagagagagagagagagagagagagagagagagagagaaaagaattttgac 300

                                                                       
Query: 101 aggacagtgcctgaaaattcaacatgtgaatgtagatatttttagtttcaaaaagggaag 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggacagtgcctgaaaattcaacatgtgaatgtagatatttttagtttcaaaaagggaag 360

                                                                       
Query: 161 gactcaagtaaagatttttatcctgtagtatgcgtgattgttttaggctaaaaatgccat 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gactcaagtaaagatttttatcctgtagtatgcgtgattgttttaggctaaaaatgccat 420

                                                                       
Query: 221 tggctgatattcatatgtaagggtgcaattgttttaagcagttttcttgatagatagccc 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggctgatattcatatgtaagggtgcaattgttttaagcagttttcttgatagatagccc 480

                                                                       
Query: 281 ttggagcaatgctttctattctttcattcattcgcatcaaaagctggcataatctttcaa 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttggagcaatgctttctattctttcattcattcgcatcaaaagctggcataatctttcaa 540

                                                                       
Query: 341 tgtccctactctatgtttttcaacttttctgactgcgttgctaaaacttttctttactat 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtccctactctatgtttttcaacttttctgactgcgttgctaaaacttttctttactat 600

                                                                       
Query: 401 ttggcaatgctttagaagcattgtccatcgctgggttactgaaggactgggctgagaaca 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttggcaatgctttagaagcattgtccatcgctgggttactgaaggactgggctgagaaca 660

                                                                       
Query: 461 aattgaaagagggcccctgaatttgagtttgaccaggatagaattggggccagagtcagg 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aattgaaagagggcccctgaatttgagtttgaccaggatagaattggggccagagtcagg 720

                                                                       
Query: 521 agaggatgacttacttggcttctctatagattaacacagcttgcaaaaatgcccgggcaa 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agaggatgacttacttggcttctctatagattaacacagcttgcaaaaatgcccgggcaa 780

                                                                       
Query: 581 gggattttaatacaatgccttttctccttttaaaatgtgcatttatgaagatgataaggg 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gggattttaatacaatgccttttctccttttaaaatgtgcatttatgaagatgataaggg 840

                                 
Query: 641 tacgtagaaagtaatttaaacc 662
           ||||||||||||||||||||||
Sbjct: 841 tacgtagaaagtaatttaaacc 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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