Query= MSMg01no528_k24.b1 MSMg01no528_k24.b1 CHROMAT_FILE:
MSMg01no528_k24.b1 PHD_FILE: MSMg01no528_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:21 2005
(392 letters)
>mm_chr1_61894542_61895335
Length = 794
Score = 710 bits (367), Expect = 0.0
Identities = 385/391 (98%), Gaps = 2/391 (0%)
Strand = Plus / Minus
Query: 4 ggaattc-tttgcttgcc-aatacagccacaagattgaaatgaagcctcagctaaacagc 61
||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 594 ggaattcttttgcttgccaaatacagccacaagattgaaatgaagcctcagctcaacagc 535
Query: 62 tcaagcaggtgcattcagtgctactttttatataaaattcacatcttctctttcatttga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcaagcaggtgcattcagtgctactttttatataaaattcacatcttctctttcatttga 475
Query: 122 ggaaatccagcatagagttgggtaagtcatctataccttagatctgactttgcttaaagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggaaatccagcatagagttgggtaagtcatctataccttagatctgactttgcttaaagg 415
Query: 182 cagtccatacaacatttaatagtgttctcatgaaatattatggttatttaatatgacaat 241
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 414 cagtccatacaacatttaatagcgttctcatgaaatattatggttatttaaaatgacaat 355
Query: 242 tggcaggaaataagaaaagtcagtcataggcatgttgaattttctgtcttttgagcttct 301
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tggcaggaaatatgaaaagtcagtcataggcatgttgaattttctgtcttttgagcttct 295
Query: 302 gagctatacttctgtgccatgtcatcagaatggtgccatatatgactaccttattttgac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagctatacttctgtgccatgtcatcagaatggtgccatatatgactaccttattttgac 235
Query: 362 cctaaaaatacacatacataaacacatacac 392
|||||||||||||||||||||||||||||||
Sbjct: 234 cctaaaaatacacatacataaacacatacac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 794
Length adjustment: 9
Effective length of query: 383
Effective length of database: 785
Effective search space: 300655
Effective search space used: 300655
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_k24.g1 MSMg01no528_k24.g1 CHROMAT_FILE:
MSMg01no528_k24.g1 PHD_FILE: MSMg01no528_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:21 2005
(564 letters)
>mm_chr1_61714957_61715920
Length = 964
Score = 1019 bits (527), Expect = 0.0
Identities = 551/561 (98%), Gaps = 5/561 (0%)
Strand = Plus / Plus
Query: 1 aggatttctgaaggcagtggggagatgacagacttaggtagatgaaagacagaaacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatttctgaaggcagtggggagatgacagacttaggtagatgaaagacagaaacagca 260
Query: 61 gaacacgcaatgagggctgaatgcaggtgtggttacaggttcagatcttgtacggggagc 120
|||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gaacacgcaatgagggatgaacgcaggtgtggttacaggttcagatcttgtatggggagc 320
Query: 121 cttaggaagtcattaattacaggccttttcctcgagctttatgacacagcttgtcagtcc 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 cttaggaagtcattaattacaggccttttcctcaagctttatgacacagcttgtcagtcc 380
Query: 181 agctactgggaatctgacaactgaggggttagacactgagcatagtgaattacttgaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctactgggaatctgacaactgaggggttagacactgagcatagtgaattacttgaatt 440
Query: 241 gattgcatatattctttataaataaaggataggatggattatagcttggatgagaacagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gattgcatatattctttataaataaaggataggatggattatagcttggataagaacagc 500
Query: 301 agagaatctgctaaaaacaaacagctcattcctgaaaccatacctatacctactctaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagaatctgctaaaaacaaacagctcattcctgaaaccatacctatacctactctaaac 560
Query: 361 atattgatctagagagttctagaaaacacaagaacacaccaaacatactttagcatttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattgatctagagagttctagaaaacacaagaacacaccaaacatactttagcatttta 620
Query: 421 atgcaatatttcccagaccaaccatatataaggatcactgcaacaatgtctgtctgtctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcaatatttcccagaccaaccatatataaggatcactgcaacaatgtctgtctgtctc 680
Query: 481 tctgtcctctctctgtcctctctccctctctccctctctccctttctccctctccctctc 540
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 tctgtcctctctc---cctctctccctctctccctctctccct--ctccctctccctctc 735
Query: 541 cctctccctctccctctccct 561
|||||||||||||||||||||
Sbjct: 736 cctctccctctccctctccct 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
