NACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAGCCCCAGTCCTCAGGTGGGCAAGGAGCCAGCGAAATGATA
GTCACTGACACAGGAAATGCTGTAACTGAATGTAATTTCTCAAAGCAAGC
ATCAGACTTAATAGTACAGAAGAAAAACAAGAAAGTTAGGTGATACATTA
TCCAAGGTACATCTCGATGTACCTTGTGAGTCTGTTAGCTTCTGTCATCA
CTCCTGGCTGTCTAGCTCTCTCCTGAGTCCCTGTGTCAGAGCACTGTCAG
TAGGCCAACTCTAATCTAGCAGGAAAGGTGCATAGAGGACTGTGGATCAG
CCCCACCTCCTGTCTGAGGATGAAGGCCTGAAGGGATCCTGTCCAAAAAG
CTCTGTTGCTTCTGTGGCCTGCATGCTCTCCTGCATGGACTGCTTCAGAA
AGACCAGGTATAGAAAATCTCGTATTGTTTTAAAGAGAAAGCAAACACAA
ATTGGGTTTATTTTATAGTTGAGAAAAGAAAGATAGAGAAATAGAATATC
AGAGAATAATTTAAAATTTTTGTGTCAGATGACTGTGGAATATAGAGTTA
TACCAAATCATTTGATCATCTCAAAATACCAATCTCATAACAATTAGTTT
TAAAAAATTATTAATAATTCTTTATAATCAGTTTAAACCCATATTAAGCA
TAACACCTGTAGAAAAAAATTTAGTTCATCTGTCAAGCAGCCTTAAATTG
TCAAAATGGCCTCTGN

NCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCCCAAATGTTACAGCTCAGCAAA
GAAAGAGCCACTCTCAGACAATCCTCAGTTAAACAACTTGTGTGCTTTAT
TCCACAAGGACAGGGACTATATTCACCTTGAAAAGTGGGGTGGGGGGAAC
CTGAGACTGCGGTACATAGGGAAGCAGGCTACCCGGGCCTGACCTGGGGC
ACAAGCCCCTTCCACTCCACTCGAGCCCCGGGCTACCTTGCTAGCAGAAT
CTTGCCCAACACCCACAAGGGCCCACACAGGACTCCCCACAGGATCCTAA
GACCTCTGGTGAGTGGAAGACAGCGCCTGCTCCAATCCAATCACGCGGAA
CCTGAGACTGCTGCACATAGGGAAGCAGGCTACCCGGGCTTGATCTTGGG
CACAAGCCCCTTCCGCTCCACTCGAGCCCCGGGCTACCTTGCCAGCAGAG
TCACCTGACATGGGCAAGGGCCCACACAGGATTCCACACGGGATCCTAAG
ACCTCTAGTGAGTGGAACACAACTTCTGCCAGGAGTCTGGTTCGAACACC
AGATATCTGGATACCTTCCCTGCAAGAAGAGAGCTTGCCTGCAGAGAATA
CTCTGCCCACTGAAACTAAGGAGAGTGCTACCCTCCAGGTCTGCTTATAG
AGGCTAACAGAGTCACCTGAAGAACAAGCTCTTAACAGAGACAACTAANA
CAGCTAGC

Query= MSMg01no528_n18.b1 MSMg01no528_n18.b1 CHROMAT_FILE:
MSMg01no528_n18.b1 PHD_FILE: MSMg01no528_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:35 2005
         (707 letters)



>mm_chr1_98233357_98234463
          Length = 1107

 Score = 1328 bits (687), Expect = 0.0
 Identities = 699/703 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagccccagtcctcaggtgggcaaggagccagcgaaatgatagtcactgacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagccccagtcctcaggtgggcaaggagccagcgaaatgatagtcactgacac 264

                                                                       
Query: 65  aggaaatgctgtaactgaatgtaatttctcaaagcaagcatcagacttaatagtacagaa 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggaatgctgtaactgaatgtaatttctcaaagcaagcatcagacttaatagtacagaa 324

                                                                       
Query: 125 gaaaaacaagaaagttaggtgatacattatccaaggtacatctcgatgtaccttgtgagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaaacaagaaagttaggtgatacattatccaaggtacatctcgatgtaccttgtgagt 384

                                                                       
Query: 185 ctgttagcttctgtcatcactcctggctgtctagctctctcctgagtccctgtgtcagag 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ctgttagcttctgtcatcactcctggctgtccagctctctcctgagtccctgtgtcagag 444

                                                                       
Query: 245 cactgtcagtaggccaactctaatctagcaggaaaggtgcatagaggactgtggatcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cactgtcagtaggccaactctaatctagcaggaaaggtgcatagaggactgtggatcagc 504

                                                                       
Query: 305 cccacctcctgtctgaggatgaaggcctgaagggatcctgtccaaaaagctctgttgctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccacctcctgtctgaggatgaaggcctgaagggatcctgtccaaaaagctctgttgctt 564

                                                                       
Query: 365 ctgtggcctgcatgctctcctgcatggactgcttcagaaagaccaggtatagaaaatctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtggcctgcatgctctcctgcatggactgcttcagaaagaccaggtatagaaaatctc 624

                                                                       
Query: 425 gtattgttttaaagagaaagcaaacacaaattgggtttattttatagttgagaaaagaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 gtattgttttaaagagaaagcaaacacaaattgggtttattttatggttgagaaaagaaa 684

                                                                       
Query: 485 gatagagaaatagaatatcagagaataatttaaaatttttgtgtcagatgactgtggaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 685 gatagagaaatagaatatcagagaataatttaaaatttttgtgtcagatgactgtagaat 744

                                                                       
Query: 545 atagagttataccaaatcatttgatcatctcaaaataccaatctcataacaattagtttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atagagttataccaaatcatttgatcatctcaaaataccaatctcataacaattagtttt 804

                                                                       
Query: 605 aaaaaattattaataattctttataatcagtttaaacccatattaagcataacacctgta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaaaaattattaataattctttataatcagtttaaacccatattaagcataacacctgta 864

                                                      
Query: 665 gaaaaaaatttagttcatctgtcaagcagccttaaattgtcaa 707
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaaaaaaatttagttcatctgtcaagcagccttaaattgtcaa 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)