NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGCAAGCCATCTGCCTCCAGATTGTTAACAATGCATTGTG
AGGCTGACAGGATCTACAGTCACCTAGGAGACATGGCTCTGAGGATGGTG
GTAGGGATTTGTTGGATTAGGTTACCTGAGCTAGAAAGCTCAACCCTGAA
TAGGGGATAGAGTCCCCCGGACTTGGGGAAGAATGAGAAAGCAAGCTGAG
CACAGGCATTTATCCATGGCCCTGCTTCCTGAACTTACATGCCATATGAG
CAACTGTCTCTTGCTCCTGCTTCTGTGACTTCTCATGATAAATCTACCTT
CCAAATGTAAGCCAAAATCGATCCATTCAGGTGTTAGCTACAACCACAAG
AAATGTGAGTAATGTGTCATTGCTAATATATGTGTGATTCAGAAATAAGA
ACATGGGAACTTAGCTGAAAGTCTGAAGCCTCAGAGGCCAGGCTTGGAAA
CTGAAGGGGAAATGGTCCTGCTAACCATGGAAGTACCTTTTAATTATACT
CGGATGTGTTATGTCTGGAATATGAAGTGTTTTTCATGAGCTTGCATTCT
GAAACTTGTTCTCTAGTGAGTGATAACATTTTCAGAGGTTATGCAACCTT
GAGGAGATGAAGGAGACTAGCTTGGGAGAAATACATCATTAGAGGAAGGA
CTCTGAATATGTACCCACCTCCTGGTTCCTATCACACACTTCCTCATCTG
TTGTGATAGGA

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCCGTCTGGCAGTTCCTCAGAAAACTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAA
TTTCCTAAACACATGANACTCAAGAAAAATGAAGACTGAAGTGTGGACAC
TATGCC

Query= MSMg01no529_b08.b1 MSMg01no529_b08.b1 CHROMAT_FILE:
MSMg01no529_b08.b1 PHD_FILE: MSMg01no529_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:54 2005
         (696 letters)



>mm_chr1_20346233_20347328
          Length = 1096

 Score = 1257 bits (650), Expect = 0.0
 Identities = 683/694 (98%), Gaps = 2/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcaagccatctgcctccagattgttaacaatgcattgtgaggctgacaggatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctgcaagccatctgcctccagattgttaacaatgcattgtgaggctgacaggatc 262

                                                                       
Query: 65  tacagtcacctaggagacatggctctgaggatggt-ggtagggatttgttggattaggtt 123
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 263 tacagtcacctaggagacatggctctgaggatggttggtagggatttgttggattaggtt 322

                                                                       
Query: 124 acctgagctagaaagctcaaccctgaataggggatagagtcccccggacttggggaagaa 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 acctgagctagaaagctcaaccctgaataggggatagagtcccccggacttgaggaagaa 382

                                                                       
Query: 184 tgagaaagcaagctgagcacaggcatttatccatggccctgcttcctgaactta-catgc 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 383 tgagaaagcaagctgagcacaggcatttatccatggccctgcttcctgaacttaacatgc 442

                                                                       
Query: 243 catatgagcaactgtctcttgctcctgcttctgtgacttctcatgataaatctaccttcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catatgagcaactgtctcttgctcctgcttctgtgacttctcatgataaatctaccttcc 502

                                                                       
Query: 303 aaatgtaagccaaaatcgatccattcaggtgttagctacaaccacaagaaatgtgagtaa 362
           |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 503 aaatgtaagccaaaatcgatccattcaggtgttagccacagccacaagaaaggtgagtaa 562

                                                                       
Query: 363 tgtgtcattgctaatatatgtgtgattcagaaataagaacatgggaacttagctgaaagt 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 563 tgtgtcattgctaatatatgtgtgattcagaaataagaacatgggaacttaggtgaaagt 622

                                                                       
Query: 423 ctgaagcctcagaggccaggcttggaaactgaaggggaaatggtcctgctaaccatggaa 482
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 623 ctgaagcctcagaggccaggcttgaaaactgaagggaaaatggtcctgctaaccatggaa 682

                                                                       
Query: 483 gtaccttttaattatactcggatgtgttatgtctggaatatgaagtgtttttcatgagct 542
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 683 gtaccttttaattatactcggatgtgctatgtctggaatatgaagtgtttttcatgagct 742

                                                                       
Query: 543 tgcattctgaaacttgttctctagtgagtgataacattttcagaggttatgcaaccttga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 743 tgcattctgaaacttgttctctagtgagtgataacattttcagaggttatgaaaccttga 802

                                                                       
Query: 603 ggagatgaaggagactagcttgggagaaatacatcattagaggaaggactctgaatatgt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ggagatgaaggagactagcttgggagaaatacatcattagaggaaggactctgaatatgt 862

                                             
Query: 663 acccacctcctggttcctatcacacacttcctca 696
           ||||||||||||||||||||||||||||||||||
Sbjct: 863 acccacctcctggttcctatcacacacttcctca 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)