BAC Information

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BAC

Clone NameMSMg01-529E21
Chromosome1 (Build37)
Map Location 73,638,925 - 73,639,451
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529E21.T7 (MSMg01no529_e21.b1)MSMg01-529E21.TJ (MSMg01no529_e21.g1)
ACCAG598216AG598217
length785775
length of high quality
(start - end)		657 (42 - 698)545 (70 - 614)
definitionCHROMAT_FILE: MSMg01no529_e21.b1 PHD_FILE: MSMg01no529_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:12 2005CHROMAT_FILE: MSMg01no529_e21.g1 PHD_FILE: MSMg01no529_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGATTACCACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATTTA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAAC
TCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGA
TTCCCAAGATATAAGGTACAATTTGCTAAACACATGAAACTCAAGAAGAA
TGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTTGGGACAAAA
CACCCATGTGAAGAGTTACAGAGACCAAGTTTGGA

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTAGACAGTGAGCCCAGTCTGGTGACTTTC
ACAGTACTAGTATGCCTTCAGAAAATGGCAGAGCCAGATCAAGGTCTGTA
ATGTATAAACACTGGTTCTAGGAGATTGGAAGGGGTCTAGACCTAGCTAC
AGGTATGCTTAAATGGGCCACAGAGGCAGTAAGGTAGCAGTATTCAAGGT
CTTTCAAGAGAAACTTATGTGTAGTCTGTCCTGTCTTTCTAGGCTCATTT
TCCTACTTGCCACCCTAAGTTTAATAACGTAGAGTAACTGATATAGTTAC
TTAATAACTTATGGCAACTCTCAACTCATTTGGATCTTCTTTATTTCACT
GTTATTTTAGATAATTATATACCTATAATTGCAGAGATCGTGTATATATA
GGATGTTTTTATATATTACATATTTATATATGACTTCATTGATAGAATAT
AAGCAAATTATCTGATAGTTCTGATATATATAAAATATGTATTTTGAATT
TAGTTTTTAACTACTTATGTCTGTAGATAGAAGTAAATCAATTTTTTTTT
TTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTGTAGCCCTGGCT
GTCCTGGCACTCACTTTGTAGACCAAGCTGGCCTCGAACTCAGAAATCCA
CCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCC
CGGCAGTAAATCAATTTTATATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_e21.g1 MSMg01no529_e21.g1 CHROMAT_FILE:
MSMg01no529_e21.g1 PHD_FILE: MSMg01no529_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:12 2005
         (545 letters)



>mm_chr1_73638725_73639669
          Length = 945

 Score =  996 bits (515), Expect = 0.0
 Identities = 524/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagacagtgagcccagtctggtgactttcacagtactagtatgccttcagaaaatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagacagtgagcccagtctggtgactttcacagtactagtatgccttcagaaaatggc 260

                                                                       
Query: 61  agagccagatcaaggtctgtaatgtataaacactggttctaggagattggaaggggtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagccagatcaaggtctgtaatgtataaacactggttctaggagattggaaggggtcta 320

                                                                       
Query: 121 gacctagctacaggtatgcttaaatgggccacagaggcagtaaggtagcagtattcaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctagctacaggtatgcttaaatgggccacagaggcagtaaggtagcagtattcaagg 380

                                                                       
Query: 181 tctttcaagagaaacttatgtgtagtctgtcctgtctttctaggctcattttcctacttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tctttcaagagaaacttatgtgtagtctgtcctgtctttctaggctcattttcatacttg 440

                                                                       
Query: 241 ccaccctaagtttaataacgtagagtaactgatatagttacttaataacttatggcaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaccctaagtttaataacgtagagtaactgatatagttacttaataacttatggcaact 500

                                                                       
Query: 301 ctcaactcatttggatcttctttatttcactgttattttagataattatatacctataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaactcatttggatcttctttatttcactgttattttagataattatatacctataat 560

                                                                       
Query: 361 tgcagagatcgtgtatatataggatgtttttatatattacatatttatatatgacttcat 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tgcagagatcgtgtatatataggatgtttttatatattatatatttatatatgacttcat 620

                                                                       
Query: 421 tgatagaatataagcaaattatctgatagttctgatatatataaaatatgtattttgaat 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tgatagaatataagcaaattatctgatatttctgatatatataaaatatgtattttgaat 680

                                                          
Query: 481 ttagtttttaactacttatgtctgtagatagaagtaaatcaattttt 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagtttttaactacttatgtctgtagatagaagtaaatcaattttt 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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