BAC Information

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BAC

Clone NameMSMg01-529F23
Chromosome1 (Build37)
Map Location 67,568,530 - 67,741,064
singlet/doubletdoublet
Overlap geneKif22-ps
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529F23.T7 (MSMg01no529_f23.b1)MSMg01-529F23.TJ (MSMg01no529_f23.g1)
ACCAG598268AG598269
length771781
length of high quality
(start - end)		601 (45 - 645)648 (76 - 723)
definitionCHROMAT_FILE: MSMg01no529_f23.b1 PHD_FILE: MSMg01no529_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:18 2005CHROMAT_FILE: MSMg01no529_f23.g1 PHD_FILE: MSMg01no529_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,568,530 - 67,569,127)(67,740,419 - 67,741,064)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTTCTGTCTTCCTGACAGAATGTTTACTGATGTGGAAACCTGAG
CCTGCTGCATTACAGCATTCTGGGAGGAAATGTAAAAGCTATTGCAATCA
AGGGCATTTTCCTGTCAGTGCCCCATATAGTGTGATGAATGGATTTCTAA
TCACCAGCATTGTTCCAGTTGGATACAACTCTGTGAGTCTAGAAAACTCT
ATAAAGTTGAGTTTTACTGTGTTCCACTTAGCATCAAACATTCAGTGGTC
CAGGAAGAGGTTCAAAGTATTCTAAAGTTACAATATGGCTGTTGCTAAAC
ATATTGGTAGAATTCTTTAGTTATTCTTCAATAAAATCTCCCATTTCCTA
AAATAATTTTAATATTTTTGATCGATAGAACTCACACTGTAATTTGGTGA
AACACATTTGCTGTTGGTGGGCTTTTCACGCGACTTGTGCATTATTTATG
ATCAATGGGGCTAGGGGCTTATTCACAGTCCTAAAAAAGAAGTGATCAAT
TTTTTCAGACTGCCCTATGTATGCCTTTTTGCCTGCCTGCCTTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
NCTCNCTCCCTCNCTCNCTNTCTCNNCTTCTCNTTCCCTCTCTTNCTCTN
TCCCTCCCTTTCTCTCTCTTTCTTCCTTCCTNNTTTTCTTCTNTTTTTTT
TTCTTCCCCTTTTTTTTCCTC

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCTGGAGACAAGGATGCCCACTC
TCCCCATATCTATTCAATGTAGTATCCAAAGTGCTTACTAGGATGGTAAG
ACAACAAAAAGAGGTCAAGGGGATACAAATTGGCAAAGAAGAAATAAAGG
TGTCACTATTTGCAGATGATATGATAATATACATAAGCAACCCCCAAAAC
TCTAATTAGGTATTATTTTCAAAGAATACTATTTGGAACCAGACAAAACA
ATGTACAAGCAGTGAAGGATGCACCTCTAAAATCATAGTCTTATAAAATA
AACTATCAGACCGAAATTGAGAGAAAGCTGAATCACTCAAAGTCTTTTCC
CTAGATAGGTCTCAAATATTCTGAGAATACAGATGTTTTGTTGTTGCTAT
TGTTTTGACATAATTTCTGTTCCTTATTTTACTAAATAGTAGATCACTTA
TTAGTTTCAAAGTAATAGTTCTCATTAAAATGTCATTTGGAGAATTAATA
TTTCTCAGGCTTTAGACCAGAAAAATGGACAGTTGTGTTAATATAGTGTT
TCCTGTCTGGTGTGCATGCAATCCTGGAAGACAAGTTGTGAGGGACAAGC
AGCCATGGCTGCCCTTCAAGAGCAATAAGAGCCATTTGCCTACTTCTGCT
GCTTTCAGGTTGATACTATCANGAAAAAATCATATGTACAAGGTGCAGTT
TTGCATATTACCTCTTTAGGTAAGGAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_f23.b1 MSMg01no529_f23.b1 CHROMAT_FILE:
MSMg01no529_f23.b1 PHD_FILE: MSMg01no529_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:18 2005
         (601 letters)



>mm_chr1_67568327_67569327
          Length = 1001

 Score = 1156 bits (598), Expect = 0.0
 Identities = 598/598 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatttctgtcttcctgacagaatgtttactgatgtggaaacctgagcctgctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatttctgtcttcctgacagaatgtttactgatgtggaaacctgagcctgctg 263

                                                                       
Query: 64  cattacagcattctgggaggaaatgtaaaagctattgcaatcaagggcattttcctgtca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattacagcattctgggaggaaatgtaaaagctattgcaatcaagggcattttcctgtca 323

                                                                       
Query: 124 gtgccccatatagtgtgatgaatggatttctaatcaccagcattgttccagttggataca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgccccatatagtgtgatgaatggatttctaatcaccagcattgttccagttggataca 383

                                                                       
Query: 184 actctgtgagtctagaaaactctataaagttgagttttactgtgttccacttagcatcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actctgtgagtctagaaaactctataaagttgagttttactgtgttccacttagcatcaa 443

                                                                       
Query: 244 acattcagtggtccaggaagaggttcaaagtattctaaagttacaatatggctgttgcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acattcagtggtccaggaagaggttcaaagtattctaaagttacaatatggctgttgcta 503

                                                                       
Query: 304 aacatattggtagaattctttagttattcttcaataaaatctcccatttcctaaaataat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacatattggtagaattctttagttattcttcaataaaatctcccatttcctaaaataat 563

                                                                       
Query: 364 tttaatatttttgatcgatagaactcacactgtaatttggtgaaacacatttgctgttgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttaatatttttgatcgatagaactcacactgtaatttggtgaaacacatttgctgttgg 623

                                                                       
Query: 424 tgggcttttcacgcgacttgtgcattatttatgatcaatggggctaggggcttattcaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgggcttttcacgcgacttgtgcattatttatgatcaatggggctaggggcttattcaca 683

                                                                       
Query: 484 gtcctaaaaaagaagtgatcaattttttcagactgccctatgtatgcctttttgcctgcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtcctaaaaaagaagtgatcaattttttcagactgccctatgtatgcctttttgcctgcc 743

                                                                     
Query: 544 tgccttctctctctctctctctctctctctctctctctctctctctctctctctctct 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgccttctctctctctctctctctctctctctctctctctctctctctctctctctct 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_f23.g1 MSMg01no529_f23.g1 CHROMAT_FILE:
MSMg01no529_f23.g1 PHD_FILE: MSMg01no529_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:18 2005
         (648 letters)



>mm_chr1_67740040_67741087
          Length = 1048

 Score = 1249 bits (646), Expect = 0.0
 Identities = 646/646 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgctggagacaaggatgcccactctccccatatctattcaatgtagtatccaaagtgct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 ttgctggagacaaggatgcccactctccccatatctattcaatgtagtatccaaagtgct 966

                                                                        
Query: 61   tactaggatggtaagacaacaaaaagaggtcaaggggatacaaattggcaaagaagaaat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  tactaggatggtaagacaacaaaaagaggtcaaggggatacaaattggcaaagaagaaat 906

                                                                        
Query: 121  aaaggtgtcactatttgcagatgatatgataatatacataagcaacccccaaaactctaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  aaaggtgtcactatttgcagatgatatgataatatacataagcaacccccaaaactctaa 846

                                                                        
Query: 181  ttaggtattattttcaaagaatactatttggaaccagacaaaacaatgtacaagcagtga 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  ttaggtattattttcaaagaatactatttggaaccagacaaaacaatgtacaagcagtga 786

                                                                        
Query: 241  aggatgcacctctaaaatcatagtcttataaaataaactatcagaccgaaattgagagaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  aggatgcacctctaaaatcatagtcttataaaataaactatcagaccgaaattgagagaa 726

                                                                        
Query: 301  agctgaatcactcaaagtcttttccctagataggtctcaaatattctgagaatacagatg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  agctgaatcactcaaagtcttttccctagataggtctcaaatattctgagaatacagatg 666

                                                                        
Query: 361  ttttgttgttgctattgttttgacataatttctgttccttattttactaaatagtagatc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  ttttgttgttgctattgttttgacataatttctgttccttattttactaaatagtagatc 606

                                                                        
Query: 421  acttattagtttcaaagtaatagttctcattaaaatgtcatttggagaattaatatttct 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  acttattagtttcaaagtaatagttctcattaaaatgtcatttggagaattaatatttct 546

                                                                        
Query: 481  caggctttagaccagaaaaatggacagttgtgttaatatagtgtttcctgtctggtgtgc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545  caggctttagaccagaaaaatggacagttgtgttaatatagtgtttcctgtctggtgtgc 486

                                                                        
Query: 541  atgcaatcctggaagacaagttgtgagggacaagcagccatggctgcccttcaagagcaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485  atgcaatcctggaagacaagttgtgagggacaagcagccatggctgcccttcaagagcaa 426

                                                          
Query: 601  taagagccatttgcctacttctgctgctttcaggttgatactatca 646
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425  taagagccatttgcctacttctgctgctttcaggttgatactatca 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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