BAC Information

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BAC

Clone NameMSMg01-529L01
Chromosome1 (Build37)
Map Location 106,513,220 - 106,692,449
singlet/doubletdoublet
Overlap geneLOC100041134, Cdh20
Upstream geneLOC383546
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529L01.T7 (MSMg01no529_l01.b1)MSMg01-529L01.TJ (MSMg01no529_l01.g1)
ACCAG598511AG598512
length733800
length of high quality
(start - end)		640 (54 - 693)161 (84 - 244)
definitionCHROMAT_FILE: MSMg01no529_l01.b1 PHD_FILE: MSMg01no529_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:46 2005CHROMAT_FILE: MSMg01no529_l01.g1 PHD_FILE: MSMg01no529_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,513,220 - 106,513,856)(106,692,290 - 106,692,449)
sequence
NNAAAATACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTTTTTCTCTTTCCAACTAAAACAAAACTTTCTTTT
TTGGAACCCAGAGAATTTCATAAGGGTATTTTGCAAGGACATAGATACCA
GCAGGTATGCTGAACAAAAAGCCTCTGCCTTCTGCATCGACCAATAACTT
CATAGAAATCTCCAGGAGGCTCTTATACTAAGTTAATGTATCCTACTGAC
CAATGAGGATACAGAATGAACAGCTTTGCCTTTGCTTTTGCTAAAACACT
CAGAGAATGACTGCTATCACATTCAGAAGCCAAATGATCTTCTTTGCTGC
TCTAGCCTCAGCTATAGAGAACAGATCATTCGTGGTGCTAAACTCAATTT
CTTCCATGTTATTTTCATGGCAATCACTTCAGCCCCAATGCAAGTTGGAA
ATTTGACCATCCTTTATATTATACTCAGGCAATTATCTTTCTGATGTACA
AATAAGAAAGCAATTGTCCTTTTCAACAAGCTTTGTGATGCTTGCCGCTA
AGTAGTCCAGGTGAAAAATTCTCCTCAGAGCACTATCCTGAGGGGTCCCA
AGAACCAGGGGAAAACCCAACAATGACAAAACTAAACAGGAAAAATGGGG
TCCTTATAGGCCACGGAATCAGTAAGTGCCATCCAACTCATTTTAATCCA
AAAGCTCACAAATCTTAGTCATATCAATCAGGC

NTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTAAATTTCTAAGTG
TCTACTAAAGCAAGATTCAGGACTTCTCTAAAGCCAACACTTCCAGGCCA
TGGCCACAGAAGTCAGATTGTTGACATTTGTGTGCAGATGATTCAATGAT
GGTGAGAGTTAATTGGTGGTTTTCTTTTCTGTATTCTTCCCTGNANTNNN
NNNNNNNNTNNNNAAAAAAAGGAGAAGATANNNANACCCCCCCCCCGAAA
NAAAAAAAAAAAAAAAAAAAAATATCACCCCCCCCCCCCCTTTTTTCTTT
TTAACTTTTTTCGTTTCTTTTTGCTTAATAAGACTGTTCGACCGCCGTCT
CTTTCCCTTTTTCATCTTTTTTTTTTGTATTCCCTTTCTCTTACCAATAA
TTCTTTTTACGATGTTACCCCTCCTTCCTTTTTTTTCTCATTTTCCTCCT
AATTATATGACCTTGTTATTTTTTTTTTTGCGATCTGCTCGTGCTAACTG
TTTCCGTTTTTTTTTTTTCCATTTTTTTTGCTTATTTTTTCTGATGTGAC
TTGTTCTCTCGTTTCCTTTTTAATATCTTCCCTCTCCGCTGTTTTTTCGT
TTTCCGTTTTTTTAACGTTTATTCTTTGTTCCTATTCTATTTCTTTTTCT
TCTGCATTGGTTCTTTTTACCTTTTTTACCCTCTTCTCGGGTTTTTTCGT
CTCACGATCTTATCCCCTATCATTTGGTGTTTATTCCCCTTCATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_l01.b1 MSMg01no529_l01.b1 CHROMAT_FILE:
MSMg01no529_l01.b1 PHD_FILE: MSMg01no529_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:46 2005
         (640 letters)



>mm_chr1_106513017_106514056
          Length = 1040

 Score = 1185 bits (613), Expect = 0.0
 Identities = 631/637 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctttttctctttccaactaaaacaaaactttcttttttggaacccagagaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctttttctctttccaactaaaacaaaactttcttttttggaacccagagaat 263

                                                                       
Query: 64  ttcataagggtattttgcaaggacatagataccagcaggtatgctgaacaaaaagcctct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcataagggtattttgcaaggacatagataccagcaggtatgctgaacaaaaagcctct 323

                                                                       
Query: 124 gccttctgcatcgaccaataacttcatagaaatctccaggaggctcttatactaagttaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccttctgcatcgaccaataacttcatagaaatctccaggaggctcttatactaagttaa 383

                                                                       
Query: 184 tgtatcctactgaccaatgaggatacagaatgaacagctttgcctttgcttttgctaaaa 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 tgtatcctactgaccaatgaggatacagaatggacagctttgcctttgcttttgctaaaa 443

                                                                       
Query: 244 cactcagagaatgactgctatcacattcagaagccaaatgatcttctttgctgctctagc 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 cactcagagaatgactgctatcacattcaaaagccaaatgatcttctttgctgctctagc 503

                                                                       
Query: 304 ctcagctatagagaacagatcattcgtggtgctaaactcaatttcttccatgttattttc 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ctcagctatagagaacagatcattcgtggagctaaactcaatttcttccatgttattttc 563

                                                                       
Query: 364 atggcaatcacttcagccccaatgcaagttggaaatttgaccatcctttatattatactc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggcaatcacttcagccccaatgcaagttggaaatttgaccatcctttatattatactc 623

                                                                       
Query: 424 aggcaattatctttctgatgtacaaataagaaagcaattgtccttttcaacaagctttgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 624 aggcaattatctttctgatgtacaaataagaaagcaattgtccttttcaacaagctttga 683

                                                                       
Query: 484 gatgcttgccgctaagtagtccaggtgaaaaattctcctcagagcactatcctgaggggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatgcttgccgctaagtagtccaggtgaaaaattctcctcagagcactatcctgaggggt 743

                                                                       
Query: 544 cccaagaaccaggggaaaacccaacaatgacaaaactaaacaggaaaaatggggtcctta 603
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 cccaagaaccaggggaaaacccgacaatgacaaaactaaacaggaaaaatggggtcctta 803

                                                
Query: 604 taggccacggaatcagtaagtgccatccaactcattt 640
           ||||||||||||||||||||||||||| |||||||||
Sbjct: 804 taggccacggaatcagtaagtgccatctaactcattt 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_l01.g1 MSMg01no529_l01.g1 CHROMAT_FILE:
MSMg01no529_l01.g1 PHD_FILE: MSMg01no529_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:46 2005
         (161 letters)



>mm_chr1_106692090_106692650
          Length = 561

 Score =  294 bits (152), Expect = 2e-84
 Identities = 158/160 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtaaatttctaagtgtctactaaagcaagattcaggacttctctaaagccaacacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggtaaatttctaagtgtctactaaagcaagattcaggacttctctaaagccaacacttc 301

                                                                       
Query: 61  caggccatggccacagaagtcagattgttgacatttgtgtgcagatgattcaatgatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caggccatggccacagaagtcagattgttgacatttgtgtgcagatgattcaatgatggt 241

                                                   
Query: 121 gagagttaattggtggttttcttttctgtattcttccctg 160
           |||||||||||||||||||||||||||| || ||||||||
Sbjct: 240 gagagttaattggtggttttcttttctgcatccttccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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