BAC Information

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BAC

Clone NameMSMg01-530B15
Chromosome1 (Build37)
Map Location 66,000,749 - 66,001,474
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
Downstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530B15.T7 (MSMg01no530_b15.b1)MSMg01-530B15.TJ (MSMg01no530_b15.g1)
ACCAG598820AG598821
length776787
length of high quality
(start - end)		730 (47 - 776)594 (76 - 669)
definitionCHROMAT_FILE: MSMg01no530_b15.b1 PHD_FILE: MSMg01no530_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:18 2005CHROMAT_FILE: MSMg01no530_b15.g1 PHD_FILE: MSMg01no530_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGAATGATTTCAACCAAACTCCTATCCTTAAGCAAGATTGATG
TTAATGGATAAGAAACAACTGATTCAATAAGTAGATAACTTAGAATATGT
TAGAAGTCAGAGACTGCCACAGGTTCTAAAATGAAAAGGCAGAATTCAAT
ACTAACTGGAAATGACTTGGGAATAGCTTGCAATGAAGTGGGGTGATCTG
AAGGTGGTATCAGGGTAGATTTGAAATCAGGATATTGCTAGATAGAAAAT
GTTGAGACAAAGGATATAGAAGACAAATTACAGATTTATAAGAAACTCTG
AAATGAAGATGGGAGAGTTTTATCAGCAAAACAGAAAGCCGGGACATCCT
GGTCCTCACTTTCAAACACAATCAATGATGAAGTCAACTCTCTATGGACA
ACAGTATCTCTGGGGGAAACCTGGAGAGCAACTAAAAAGTGCAGCAATCA
TAGATACAGTGGCAAGGACTCATGAATAGAATGGGCTGAAAAATGACACT
CTTCATTTTACCTCATTCTTCAAACTAACTCATTGCCATAGGGAATCCCT
TTTGCCAAGCTTCTCCCCATGGGAGAAGAGTGGGAAACGAGTGGGCTTAA
GAACCATTGACAATATGTATTTCAGCATCCTTGGCCATCACTGCAGAGGA
CTCTCACTGGTTTCAACAGCACCAGACGCTGGATGATATGGACCTGGAGA
TACCAAGATCAGTCTTTATTCTCCTA

NCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACAGGG
TACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTTGAACTTTCTAAC
GAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGG
TAAGTCTGGCCTTGAACTTTCTAATGAAATTCAAGACAGTCTATCAGAAG
TAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTA
GTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGC
AGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGC
GGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACAAAATAAGTAT
ACAGGCCTTTCCACGGGTCTTGAACCTGAGGAAAAGTTTAGGTCAGGTAA
GAATACCTGGGGAGAGATTAGAAGGAAGGAAAAGAAAAAAGATCAATTAG
CGGAGGTCTCTAGGAGAAGGAGACTATACTCATCACTAGATGAGCTCAAG
GAGCCAGTTCTTAGTAGTTCTGAATCAGATGAAAAGGCTATTAGGGCCTG
GAAGGCACTCTCCCGAGCAGGTGAAGCCACTGGACAACTAACAAAGATCG
TCCAGGGACCAGGAGTCCTTCTCAGATTTTGTGGCCAGAATGACAGAAGC
AGCAAAGCGTATTTTTGGAGATTCAGAGNCAGCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_b15.b1 MSMg01no530_b15.b1 CHROMAT_FILE:
MSMg01no530_b15.b1 PHD_FILE: MSMg01no530_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:18 2005
         (730 letters)



>mm_chr1_66000545_66001674
          Length = 1130

 Score = 1384 bits (716), Expect = 0.0
 Identities = 724/728 (99%), Gaps = 4/728 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaatgatttc--aaccaaactcctatccttaagcaagattgatgttaatgga 62
           ||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 gaattcatgaatga--tcaaaaccaaactcctatccttaagcaagattgatgttaatgga 873

                                                                       
Query: 63  taagaaacaactgattcaataagtagataacttagaatatgttagaagtcagagactgcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 taagaaacaactgattcaataagtagataacttagaatatgttagaagtcagagactgcc 813

                                                                       
Query: 123 acaggttctaaaatgaaaaggcagaattcaatactaactggaaatgacttgggaatagct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acaggttctaaaatgaaaaggcagaattcaatactaactggaaatgacttgggaatagct 753

                                                                       
Query: 183 tgcaatgaagtggggtgatctgaaggtggtatcagggtagatttgaaatcaggatattgc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tgcaatgaagtggggtgatctgaaggtggtatcagggtagatttgaaatcaggatattgc 693

                                                                       
Query: 243 tagatagaaaatgttgagacaaaggatatagaagacaaattacagatttataagaaactc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tagatagaaaatgttgagacaaaggatatagaagacaaattacagatttataagaaactc 633

                                                                       
Query: 303 tgaaatgaagatgggagagttttatcagcaaaacagaaagccgggacatcctggtcctca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgaaatgaagatgggagagttttatcagcaaaacagaaagccgggacatcctggtcctca 573

                                                                       
Query: 363 ctttcaaacacaatcaatgatgaagtcaactctctatggacaacagtatctctgggggaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctttcaaacacaatcaatgatgaagtcaactctctatggacaacagtatctctgggggaa 513

                                                                       
Query: 423 acctggagagcaactaaaaagtgcagcaatcatagatacagtggcaaggactcatgaata 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 acctggagagcaactaaaaagtgcagcaatcatagatacagtggcaaggactcatgaata 453

                                                                       
Query: 483 gaatgggctgaaaaatgacactcttcattttacctcattcttcaaactaactcattgcca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaatgggctgaaaaatgacactcttcattttacctcattcttcaaactaactcattgcca 393

                                                                       
Query: 543 tagggaatcccttttgccaagcttctccccatgggagaagagtgggaaacgagtgggctt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tagggaatcccttttgccaagcttctccccatgggagaagagtgggaaacgagtgggctt 333

                                                                       
Query: 603 aagaaccattgacaatatgtatttcagcatccttggccatcactgcagaggactctcact 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aagaaccattgacaatatgtatttcagcatccttggccatcactgcagaggactctcact 273

                                                                       
Query: 663 ggtttcaacagcaccagacgctggatgatatggacctggagataccaagatcagtcttta 722
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggtttcaacagcaccagacgctggatgatatggacctggagataccaagatcagtcttta 213

                   
Query: 723 ttctccta 730
           ||||||||
Sbjct: 212 ttctccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space:   806400
Effective search space used:   806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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