Query= MSMg01no530_g02.b1 MSMg01no530_g02.b1 CHROMAT_FILE:
MSMg01no530_g02.b1 PHD_FILE: MSMg01no530_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:40 2005
(699 letters)
>mm_chr1_41586781_41587879
Length = 1099
Score = 1087 bits (562), Expect = 0.0
Identities = 588/598 (98%), Gaps = 4/598 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaaacag---atttcatattttaagttggcttttacaatattaccttgtcctgg 61
||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaattcaaaacagaaaataacat-ttttaagttggcttttacaatattaccttgtcctgg 539
Query: 62 ccattagcagttaatactttatttcaataagaagggacattggcctgtgatgttgtcaag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccattagcagttaatactttatttcaataagaagggacattggcctgtgatgttgtcaag 479
Query: 122 ttcatgtcctatcacatgagaaaagtgttgacagcaagagtacatattgcctggaaattc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttcatgtcctatcacatgagaaaagtgttgacagcaagagtacatattgcctggaaattc 419
Query: 182 aagtgaaggatattttatacaaaaatgacttagtcgacaactttgcttataaaacaccct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aagtgaaggatattttatacaaaaatgacttagtcgacaactttgcttataaaacaccct 359
Query: 242 tcaactatcattttacaactaaaatgatgagggggaaaaacaatttaaaattagaaaaga 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 358 tcaactatcattttacaactaaaatgatgaggggggaaaacaatttaaaattagaaaaga 299
Query: 302 aatttttgattagaatattgccattaattttattcagattgatcctaatgccattattca 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aatttttgattagaatattgccattaattttattcagattgatcctaatgccattattcg 239
Query: 362 tagatttttaaagtttttctttaaagatttatttattgttatatgtaagtacactgtagc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagatttttaaagtttttctttaaagatttatttattgttatatgtaagtacactgtagc 179
Query: 422 tctcttcaaacactccagaagaggacatcagaccttattatggatggttgtgagccacca 481
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 178 tctcttcaaacactccagaagaggacatcagaccttattatggatggtcgtgagccaccg 119
Query: 482 tatggttgctgggatttaaactcaggaccttcagaagagcagtcagtgctctcaactgct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tatggttgctgggatttaaactcaggaccttcagaagagcagtcagtgctctcaactgct 59
Query: 542 gagctctctctagagcccccattcatagatttcataagacatgttgttactgttggac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 gagctctctctagagcccccattcatagatttcataagacatgttgttactgttggac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_g02.g1 MSMg01no530_g02.g1 CHROMAT_FILE:
MSMg01no530_g02.g1 PHD_FILE: MSMg01no530_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:40 2005
(648 letters)
>mm_chr1_41402969_41404017
Length = 1049
Score = 1116 bits (577), Expect = 0.0
Identities = 635/659 (96%), Gaps = 12/659 (1%)
Strand = Plus / Plus
Query: 1 agaaggcgtctcttctgggaatgcagagtagccaccttaagctgtattcaccacaagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agaaggcgtctcttctgggaatgcagagtagccaccttaagctgtattcaccacaagcca 251
Query: 61 cgactgtctctctgtacactgacacttgctcatctagggtctgtcaccgcaatcttcaca 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggactgtctctctgtacactgacccttgctcatctagggtctgtcaccgcaatcttcaca 311
Query: 121 aaggatggtttattttatttaattgtatagaacaccctcaaatcttttccataccctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaggatggtttattttatttaattgtatagaacaccctcaaatcttttccataccctctt 371
Query: 181 gatctaatcaactttattgaaaagcacctttcacctctataatggtattagttttcctcg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gatctaatcaactttattgaaaagcacctttcacctctataatggtattagttttcctct 431
Query: 241 taatcgcttt-taatttctgtgccacttttctcttactctgatataatttgcattaatga 299
|||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taatcg-tttctaatttctgcgccacttttctcttactctgatataatttgcattaatga 490
Query: 300 aatgaactacttaagcttattgttttttctgttgttgtt------ttttttttg---ttt 350
||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 491 aatgaactacttaagcttattgttttttctgttgttgttgttttgtttttttttcatttt 550
Query: 351 gttttgttttgtttttacatagggtctcattgcccagaatacctctgaactctgggctca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gttttgttttgtttttacatagggtctcattgcccagaatacctctgaactctgggctca 610
Query: 411 agcagttctcctggctcagccatccttgcagttgagtctgcagctatgtactgctgtact 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agcagttctcctggctcagccatccttgcagttgagtctgcagctatgtactgctgtact 670
Query: 471 actgaatgtttttaaaggatgtgttgtgttcctatcgtgacatataggaaaagaaatagt 530
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 671 actggatgtttttaaaggatgtgttgtgttcccatcgtgacatataggaaaagaaatagt 730
Query: 531 aacctatttcacacactggaaatccttatacttgccttcacaggtaagtgtcttccttac 590
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 731 gacctatttcacacactggaagtccttatacttgccttcacaggcaagtgtcttccttac 790
Query: 591 ttcaggactctggaaac-agagggtttctgctgtatcagggaagtgtctggtgcataga 648
||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 791 ttcaggactctggaaaccagagggcttctgctgtgtcagggaagtgtctggtgcataga 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space: 662882
Effective search space used: 662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
