BAC Information

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BAC

Clone NameMSMg01-530H05
Chromosome1 (Build37)
Map Location 173,387,538 - 173,388,147
singlet/doubletsinglet
Overlap geneF11r
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654
Downstream geneRefbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530H05.T7 (MSMg01no530_h05.b1)MSMg01-530H05.TJ (MSMg01no530_h05.g1)
ACCAG599086AG599087
length779781
length of high quality
(start - end)		671 (35 - 705)610 (74 - 683)
definitionCHROMAT_FILE: MSMg01no530_h05.b1 PHD_FILE: MSMg01no530_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:46 2005CHROMAT_FILE: MSMg01no530_h05.g1 PHD_FILE: MSMg01no530_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCATTGCACTGTCGGGAAGTAGCCATGATGCTCAGTAAATGAAGTA
ATGACACGGATGCAAGAAAGGTGGCACAGGGAATGGAGCACCAGGGAGAT
GGATGAGAGAATGGAGCACCACGGAAATGGCACAGATAATGGAGCACCAG
GGAGATGGAGCACCATGGAGATGGAGCAGGGAATGGAGCACCAGGGAAGT
GTGTACTGACTATGCACTGAATCTAGGAACCATTGTAACAGACTCTCAGA
CCTTAACACAACTGAAACCATGTTAGATGCTCCAAGACACCGTCCGGACC
ACATAGGCACCTACACCTGCAAAAATGAGAACAAAGACTTACATCATAGT
TCACAGTTCTGGGAAAGTCCCTAAATGAACTAACCTTACTTTTTGGCTTC
TGTAGCTATGCCTATTGCTACCTGTTTTTGGTAATTGAAGTGTGTTAACC
AGGATACATTTTCTTGTGCATAAAAGCCAAGAACAATAAAGCTTATGGAT
ACATGATTTGTTCTGCATGGTTAATTCCCTATGTAGCCCACCAGCCATGA
ATAAAGGATTTCTATTGGCTATAGGAGTCCGTGAGTTCTCTGGAGAGTCA
CCTCCCAACACCATTGTCATTTGAAGATTAGTTGAACTGCTCCAAATTTT
TATTCGCTTATGGTGATATTTCTCTTCCAAACAGTACCCCCCTGTGTCTC
AGGACTCCACTGAGCTCACTGTCTTTCTT

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGCATAGACTAGGCTGACCTGGAAC
TTGCATCAGATTTCTTGCCTTTGCTTTTTTTTTTTTTTTTTTTTTAAGAT
TTATTTATTTCATGTATATGAGTACACTGTCACTGTCCTCAGACATACCA
GAAGGCAGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGGTTGC
TAGGAATTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTCTTAACCAC
TGAGCCATCTCTCCAGCCCACAATTTTTAATTGTTTGACATGTGTGTCAA
TGTCCAAGAACACCTTTGTCAAGTTGATTCTCTTCTTTGACCTTGACATG
GGTTCTGGGGAACAAACATGTTTGCATCAAGTGGGAGGTGCGGAGGTTCC
TGGTTATGGTTGAATCACCAAGTGGGAGGTGCCTGGTTATGATTGATTGA
TTGCATCATCAAGTGGGAGGTGTCTTTACCCACTGAGCTTTTAATCACAT
CCCCAGAAAGAGTTTCTAATTTAATGAGGGTTATTTGATTTAATTACTAG
ATCTGTTGTTATACTTGAGTATGAGTTCAATATTAAAATTATCATGAAAA
ATATGCAACGTTATAGTATTAGAAGTAATTTATAGAATCAGTGAGTTTTG
ACTTTCTAAGAGTAACATCTGAACATGACAGTGGCGGCGCACACATTTAA
ATTGGACACATGGGAAGCAAAAGGGGGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_h05.g1 MSMg01no530_h05.g1 CHROMAT_FILE:
MSMg01no530_h05.g1 PHD_FILE: MSMg01no530_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:46 2005
         (610 letters)



>mm_chr1_173387338_173388347
          Length = 1010

 Score = 1180 bits (610), Expect = 0.0
 Identities = 610/610 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcatagactaggctgacctggaacttgcatcagatttcttgcctttgcttttttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcatagactaggctgacctggaacttgcatcagatttcttgcctttgcttttttttt 260

                                                                       
Query: 61  ttttttttttttaagatttatttatttcatgtatatgagtacactgtcactgtcctcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttttttttaagatttatttatttcatgtatatgagtacactgtcactgtcctcaga 320

                                                                       
Query: 121 cataccagaaggcagcatcagatcccattacagatggttgtgagccaccatggttgctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataccagaaggcagcatcagatcccattacagatggttgtgagccaccatggttgctag 380

                                                                       
Query: 181 gaattgaactcagaacctctggaagagcagtcagtgctcttaaccactgagccatctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattgaactcagaacctctggaagagcagtcagtgctcttaaccactgagccatctctc 440

                                                                       
Query: 241 cagcccacaatttttaattgtttgacatgtgtgtcaatgtccaagaacacctttgtcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcccacaatttttaattgtttgacatgtgtgtcaatgtccaagaacacctttgtcaag 500

                                                                       
Query: 301 ttgattctcttctttgaccttgacatgggttctggggaacaaacatgtttgcatcaagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgattctcttctttgaccttgacatgggttctggggaacaaacatgtttgcatcaagtg 560

                                                                       
Query: 361 ggaggtgcggaggttcctggttatggttgaatcaccaagtgggaggtgcctggttatgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaggtgcggaggttcctggttatggttgaatcaccaagtgggaggtgcctggttatgat 620

                                                                       
Query: 421 tgattgattgcatcatcaagtgggaggtgtctttacccactgagcttttaatcacatccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgattgattgcatcatcaagtgggaggtgtctttacccactgagcttttaatcacatccc 680

                                                                       
Query: 481 cagaaagagtttctaatttaatgagggttatttgatttaattactagatctgttgttata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaagagtttctaatttaatgagggttatttgatttaattactagatctgttgttata 740

                                                                       
Query: 541 cttgagtatgagttcaatattaaaattatcatgaaaaatatgcaacgttatagtattaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttgagtatgagttcaatattaaaattatcatgaaaaatatgcaacgttatagtattaga 800

                     
Query: 601 agtaatttat 610
           ||||||||||
Sbjct: 801 agtaatttat 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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