BAC Information

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BAC

Clone NameMSMg01-530H24
Chromosome1 (Build37)
Map Location 88,052,442 - 88,052,941
singlet/doubletsinglet
Overlap geneArmc9
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b
Downstream geneB3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530H24.T7 (MSMg01no530_h24.b1)MSMg01-530H24.TJ (MSMg01no530_h24.g1)
ACCAG599123AG599124
length697787
length of high quality
(start - end)		280 (52 - 331)504 (82 - 585)
definitionCHROMAT_FILE: MSMg01no530_h24.b1 PHD_FILE: MSMg01no530_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:50 2005CHROMAT_FILE: MSMg01no530_h24.g1 PHD_FILE: MSMg01no530_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTAGTCACTTCTATTTGGTCGCTTGTGTCTTTAAAATAA
ATGCCCAGCAGGAAGGTAGGTGGGTTCCTTCATGAGTTCAAGGCCAGCCT
GGGCTACCTAGTGAGACCCTACTTTAAAACAAACGGAGCAGGGCAGTGGT
GGTGCATGCCTTTAATCCCAGCACTTGAGAGGCAGAGTGGACAGATNTTC
TGAGTTTGAGGCTAGACTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGG
CTATACAGAGAAACCCTGTCTTGAAAAACCAAACCATAACCAAACCAACC
AAAAAAACAAAACAAAAACCCNCACCCCCCCCCACCAATCCAAAGAAACC
GAAACCTTTTCCCACAAAAACTCCCCAGGAATCCCGGGGCATCTCCCAAA
AAGTCCTTCCCTTCCCAAAAACCTTGAATGTCCGGGGAAAACCTAAACCT
GGGCCCCCCCCCCCCCTTGGTTTTTTTTAAACCCGCGGGGCAAAATTTTC
CCCCTTTTGTGTGTTTGGGGAAAATTTTTTAAACACACCCCGGGGGGAAA
GGGGGGCCCCCCCCCTCCTTTTTTTTTTTCACACCAAAAAAAAAGTGGGG
GAGAAATTTTTTTTTTTTTTACAAAAAAAAAAGAAAAAAAAATGTTG

NTTTTCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGTACCCTGACACGTTG
CCTTAGTCAGTGTGGTTCCTACCGTCCCCTTTCTTCAAACCATTACTCTG
TTTCTAATGAGATGGTGACCTGGGATTCCCTGAATCTCTTTCCATCCAGC
TCCAGGCCTGTCTGAACCAGGCTGTCTAACAGGCATCTTGGGGCTTAACG
CCACACACAATGCTTGCCTTGAGTTATGAAGGGGATTCTGATGCAGGAGC
ATCAGTGAGAGGACATTGAAGTCAACCAGTGGGGAGTTCCTCTGGGAATC
CACAGCACAGACGACTGGAGAGTAATGGGCCAGAAGAGGTGTTTTCCCAA
GTCTCTCTGGGTGGGTACCTTTAAGCAGAGACCTAACAAGATGTAGATGT
TTGCAGCAAGAGCATCAAATCAGACAGAACTGTGGTTATGCAGGTCCCTG
AGGGCAGGTATATTGTGGGCATCAGGGAGTTTCCGCTTGGCAGTGTGGTT
CAAGTCAGATGAGTGGAGAGCTACCAAGGGCTTATAGAGATGGGCCTAAG
GAGTCTGCTTCCATCTGTGGGTTCCCAGAAACACCTCCATGTGTGGGGGT
CACAGGCATGTGTGCATGACACCCTTCCCTTGCGATTGCCAGCATATCTG
GTGGAGAGCCACATAAAGAATTTGATCGGACCTCTACTAANGGGACTCAA
ATGAGTGTGNCAGAATCANGCCTTGGCAGCCTGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_h24.g1 MSMg01no530_h24.g1 CHROMAT_FILE:
MSMg01no530_h24.g1 PHD_FILE: MSMg01no530_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:50 2005
         (504 letters)



>mm_chr1_88052242_88053145
          Length = 904

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtaccctgacacgttgccttagtcagtgtggttcctaccgtcccctttcttcaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtaccctgacacgttgccttagtcagtgtggttcctaccgtcccctttcttcaaacc 260

                                                                       
Query: 61  attactctgtttctaatgagatggtgacctgggattccctgaatctctttccatccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 attactctgtttctaatgagatggtgacctgggattccctgaatccctttccatccagct 320

                                                                       
Query: 121 ccaggcctgtctgaaccaggctgtctaacaggcatcttggggcttaacgccacacacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggcctgtctgaaccaggctgtctaacaggcatcttggggcttaacgccacacacaat 380

                                                                       
Query: 181 gcttgccttgagttatgaaggggattctgatgcaggagcatcagtgagaggacattgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgccttgagttatgaaggggattctgatgcaggagcatcagtgagaggacattgaag 440

                                                                       
Query: 241 tcaaccagtggggagttcctctgggaatccacagcacagacgactggagagtaatgggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaccagtggggagttcctctgggaatccacagcacagacgactggagagtaatgggcc 500

                                                                       
Query: 301 agaagaggtgttttcccaagtctctctgggtgggtacctttaagcagagacctaacaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagaggtgttttcccaagtctctctgggtgggtacctttaagcagagacctaacaaga 560

                                                                       
Query: 361 tgtagatgtttgcagcaagagcatcaaatcagacagaactgtggttatgcaggtccctga 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 tgtagatgtttgcagcaagagcatcaaatcagacaggactgtggttatgcaggtccctga 620

                                                                       
Query: 421 gggcaggtatattgtgggcatcagggagtttccgcttggcagtgtggttcaagtcagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcaggtatattgtgggcatcagggagtttccgcttggcagtgtggttcaagtcagatg 680

                               
Query: 481 agtggagagctaccaagggc 500
           ||||||||||||||||||||
Sbjct: 681 agtggagagctaccaagggc 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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