BAC Information

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BAC

Clone NameMSMg01-530I04
Chromosome1 (Build37)
Map Location 89,390,508 - 89,391,091
singlet/doubletsinglet
Overlap geneNgef
Upstream genePtma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik
Downstream geneLOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530I04.T7 (MSMg01no530_i04.b1)MSMg01-530I04.TJ (MSMg01no530_i04.g1)
ACCAG599131AG599132
length745733
length of high quality
(start - end)		608 (52 - 659)646 (83 - 728)
definitionCHROMAT_FILE: MSMg01no530_i04.b1 PHD_FILE: MSMg01no530_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:51 2005CHROMAT_FILE: MSMg01no530_i04.g1 PHD_FILE: MSMg01no530_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGAGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATCACAGATCTGCCCAGAGGCTTGTCTCCAAGGCGATT
CTAGATCCTGTCAATTTGATGGTATTAACCATCACACCTGGCTTCTGGCC
CCCATCCTGCCCCCTCTCCCAGAGGCAGGTCTGTTCTGAACATGTCTCCG
GCGAGTAGAGGGGTGGCGCTGACTCAGAGTCCCCTTTTCACTGGAGGACA
AAGCTGTTAGAAACAGAAAAGTTTATAAATTTATGCTGGGGCTTGGGGGG
CTGGAGCCCACTACAGAAGATGCAAGACAAGGCTACTTCTCACAGTCTGG
CAATGTGCGTGTGCGTGTGCGCGTGTATGTGTGTTCCTTGAACAGGAACC
TTTAGTAGGGGCCCATGACACTCTCTGACCTCCATCCTGTCCCTTGTCCT
TTGTGCCCAGTGTTACTCTGAACTGGCACTGGCATTCCTGGGAAGGGGCT
TCCATGCTCAGGTGGTCTGTTGGGAGCTTTGTGGCAGGCTGAGCCCCCAG
ACTGTGTTTTGTACGTTAACCTAACTTCTCACAATCACCCAAGGAGCCCA
AGCTGCCATTCTTATTTAGTAAGATTAAGCTGTTATCCCTGGGACCGGGA
TTCTGACCACCCGAGGCCAGTGACTGTTGGCACCCTAGCTGTTCACAGCA
AGCAGATACGTCACAGTCCTCACCAATGGCAGAGCTGCCTGCACT

GTTTTTTTCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTCCTTGTCAGTCT
CCCAAAGATAATTGGGGTTAGCACTTAGAAACCAGAGTACTTGGTCAGCT
ATTGTCTTTTTTAAAGATTTATTTTTCATATTATTCCTTTTATTATTTTG
AGACAGAGTCTGTCTATGTAGTCTTGGTTCTCCTGTAACTAAGCATATGG
ACCAGGCTGGCCCAAACTCCCAGAGATCTGCCTGCCTCTGCCTCTATTTT
TATTATTCTTAAATTATGTGTATGTGTGTAAGTTTGTGTATGAGCATTAG
TGAGTTTAGGTACCCACAGAATCCAGAAGAGGGCATCAGATCCCTTGGAG
CTGGGGATGTGATGCAGGTGGTTTGAGCCATCCAATATGGATGATGGGAA
CTAAACTCAGGTCCTCTGGAAGAGCAGCATCTCCTCTTAGCTGATGCCTC
ATCATCTTTTTGACAGATAATTTAGCAATTCTTTTTTTTTAACATTGAAA
TTTCTGTCTGTGTTAGCTACTTATTTCTGCACTAACAAACCGTCTGATGA
CTTCATGACTTAAAATAATAGCTAACATTTATCAGCTCACCAAGCATCTG
AGGGCTAGGGATTCAGAAGCAGTTTAATGGGGTGAGTCTGACTCAGGGTC
TCTCGTGTGGCTGCAGTTAAAATGGCAGGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_i04.b1 MSMg01no530_i04.b1 CHROMAT_FILE:
MSMg01no530_i04.b1 PHD_FILE: MSMg01no530_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:51 2005
         (608 letters)



>mm_chr1_89390508_89391515
          Length = 1008

 Score = 1013 bits (524), Expect = 0.0
 Identities = 568/584 (97%), Gaps = 4/584 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatcacagatctgcccagaggcttgtctccaaggcgattctagatcctgtcaa 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaattccatcacagacctgcccagaggcttgtctccaaggcgattctagatcctgtcaa 525

                                                                       
Query: 64  tttgatggtattaaccatcacacctggcttctggcccccatcctgccccctctcccagag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttgatggtattaaccatcacacctggcttctggcccccatcctgccccctctcccagag 465

                                                                       
Query: 124 gcaggtctgttctgaacatgtctccggcgagtagaggggtggcgctgactcagagtcccc 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcaggtctgttctgaacttgtctccggcgagtagaggggtggcgctgactcagagtcccc 405

                                                                       
Query: 184 ttttcactggaggacaaagctgttagaaacagaaaagtttataaatttatgctggggctt 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 404 ttttcactggaggacaaagctgttagaaacaaaaaagtttataaatttatgctggggctt 345

                                                                       
Query: 244 ggggggctggagcccactacagaagatgcaagacaaggctacttctcacagtctggcaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggggggctggagcccactacagaagatgcaagacaaggctacttctcacagtctggcaat 285

                                                                       
Query: 304 gtgcgtgtgcgtgtgcgcgtgtatg--tgtgt--tccttgaacaggaacctttagtaggg 359
           ||||||||||||||||  |||| ||  |||||  ||||||||||||||||||||||||| 
Sbjct: 284 gtgcgtgtgcgtgtgcatgtgtgtgcgtgtgtgctccttgaacaggaacctttagtaggt 225

                                                                       
Query: 360 gcccatgacactctctgacctccatcctgtcccttgtcctttgtgcccagtgttactctg 419
           ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 224 gcccacgacactctctgaccaccatcctgtcccttgtcctgtgtgcccagtgttactctg 165

                                                                       
Query: 420 aactggcactggcattcctgggaaggggcttccatgctcaggtggtctgttgggagcttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aactggcactggcattcctgggaaggggcttccatgctcaggtggtctgttgggagcttt 105

                                                                       
Query: 480 gtggcaggctgagcccccagactgtgttttgtacgttaacctaacttctcacaatcaccc 539
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 104 gtggcaggctgagcccccagactgtgctttgtacgttaacctaacttctcacagtcaccc 45

                                                       
Query: 540 aaggagcccaagctgccattcttatttagtaagattaagctgtt 583
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  aaggagcccaagctgccattcttatttagtaagattaagctgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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