BAC Information

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BAC

Clone NameMSMg01-530N05
Chromosome1 (Build37)
Map Location 69,905,487 - 69,906,195
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530N05.T7 (MSMg01no530_n05.b1)MSMg01-530N05.TJ (MSMg01no530_n05.g1)
ACCAG599372AG599373
length784790
length of high quality
(start - end)		720 (47 - 766)604 (74 - 677)
definitionCHROMAT_FILE: MSMg01no530_n05.b1 PHD_FILE: MSMg01no530_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:16 2005CHROMAT_FILE: MSMg01no530_n05.g1 PHD_FILE: MSMg01no530_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTAGAGCTGAAGGTGCTGTCTGACATGCACACACTCTCCTC
ATCTCAGTACACTCACTCAGCTCTTGGTCAGAAACAGGTTGGCTGGTTAC
TGAAAATTAGTCACCAACATTTATTTTAAATTTAGGGAGACAAAAGGAAA
AGAAAACTTAGACTTAAGTGGCTGTGATACTCATCTGTGCCTAGACATTA
CAAAGCAATCAAGGCCCTTTCCGGGACTGCTTTTAAGTTTGGAGAATAAA
ATCTATGTTAACACCAATATGAGTAAAATAACAGAATAAAGGGTTCTTAC
TTCTTTTGACTTAAAAGTAAGCTAGTAAATATGACAGCAACAGCACTGAA
CTTTTTCTTTCAAAGTTGTGCATGCACACTAGAACAAAAGTGTAAAGGTG
GGTGGCAGAGGGTGGAAGAAAGACTATCATGTTGATACTTCCTTTTTAAT
GTGATATCATTAAAGAGAAAATGTCAAGGTTACAGAAAACTCAATCATAG
CATCCTTACAAGTCCCATGTGTCTCCCCCTCCCCATATGTGCACTGCCTG
TCCCACCAGAGCAATTCATTTATTGCCACCCAAAGAGCTCAGTTAACACT
GTTCTTTGGGAAGGACTGTAAACTACTGAAAGTATGTCACAAAGAATACA
TTGGCTCCTTCCTTCTACTGTTTCTATTAATTTCATTATTACTTTTGAAA
TTAGCTTATCTACACAAGAGAAAATTTCACAGAN

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACATATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
AACACATGNAAACTCAGAAAAATGAATTCTGAAGTGTGGACACTATGCCC
CCTCCTTNAGAGTGGGAACAAACACCCTTGGGAAGGAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_n05.b1 MSMg01no530_n05.b1 CHROMAT_FILE:
MSMg01no530_n05.b1 PHD_FILE: MSMg01no530_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:16 2005
         (720 letters)



>mm_chr1_69905280_69906395
          Length = 1116

 Score = 1321 bits (683), Expect = 0.0
 Identities = 704/713 (98%), Gaps = 4/713 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctctgtagagctgaaggtgctgtctgacatgcacacactctcctcatctcagtacact 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ttctctgtagagctgaaggtgctgtctgacatgcacacactctcctcatctcagtacact 857

                                                                       
Query: 68  cactcagctcttggtcagaaacaggttggctggttactgaaaattagtcaccaacattta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cactcagctcttggtcagaaacaggttggctggttactgaaaattagtcaccaacattta 797

                                                                       
Query: 128 ttttaaatttagggagacaaaaggaaaagaaaacttagacttaagtggctgtgatactca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttttaaatttagggagacaaaaggaaaagaaaacttagacttaagtggctgtgatactca 737

                                                                       
Query: 188 tctgtgcctagacattacaaagcaatcaaggccctttccgggactgcttttaagtttgga 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tctgtgcctagacattacaaagcaatcaaggccctttccgggactgcttttaagtttgga 677

                                                                       
Query: 248 gaataaaatctatgttaacaccaatatgagtaaaataacagaataaagggttcttacttc 307
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 676 gaataaaatctatgttaacaccaatataagtaaaataacagaataaaaggttcttacttc 617

                                                                       
Query: 308 ttttgacttaaaagtaagctagtaaatatgacagcaacagcactgaactttttctttcaa 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttttgacttaaaagtaagctagtaaatatgacagcaacagcactgaactttttctttcaa 557

                                                                       
Query: 368 agttgtgcatgcacactagaacaaaagtgtaaaggtgggtggcagagggtggaagaaaga 427
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atttgtgcatgcacactagaacaaaagtgtaaaggtgggtggcagagggtggaagaaaga 497

                                                                       
Query: 428 ctatcatgttgatacttcctttttaatgtgatatcattaaagagaaaatgtcaaggttac 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctatcatgttgatacttcctttttaatgtgatatcattaaagagaaaatgtcaaggttac 437

                                                                       
Query: 488 agaaaactcaatcatagcatccttacaagtcccatgtgtctccccctccccatatgtgca 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agaaaactcaatcatagcatccttacaagtcccatgtgtctccccctccccatatgtgca 377

                                                                       
Query: 548 ctgcctgtcccaccagagcaattcatttattgccacccaaagagctcagttaacactgtt 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 376 ctgcctgtcccaccagagcaattcatttattgccacccaaagagctcagttaacactatt 317

                                                                       
Query: 608 ctttgggaaggactgtaaactactgaaagtatgtcacaaagaatacattggctccttcct 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 316 ctttgggaaggactgtaaactactgaaagtatgtcacaaagaatacattggc----tcct 261

                                                                
Query: 668 tctactgtttctattaatttcattattacttttgaaattagcttatctacaca 720
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctactctttctattaatttcattattacttttgaaattagcttatctacaca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1116
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1106
Effective search space:   785260
Effective search space used:   785260
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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