CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATTTCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAAACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAGATTGGAAAAGATGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCAAAAAATTCCACCAGAGAACTCCTAAACCT
GATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGT
CAATGGCCTTTCTCTACACAAAAAAAAAAAAAAAAAAAAAAAAACAGGCT
GAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATGT
AGGTAGCTTCTTGATGAGGGTTAGGACCCTGTGTCCACTTTTGCTTTCAG
TGCTGAATCTGCCCTAAACCTGTCCAGGTCCTTTGAATGGTGCCACAATC
TCTGTGAGTTAATATGCATTATCTTATGTGTCTGATGTGTCTGGAACACT
GTTTCCTATGGAGACTTCCATCACCTCTGACTCTTTATTTCTGCTTCCTC
TGCCACATAGATCATCTGAGGGNATATATATATATATATATATATATATA
TATATATATATATATAAAATGTTCATTTCCTTCTA

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTTCTGTGGTTCCTCTGTTGCTG
TCCTTATAAGATTTATGTACAGAACAGCTTGAATCTCAGATGTCACCACA
TATTTTTTTTTCCAGAGCTGAGGACTGAACCCAGGGCCTTAAGCTTGCTA
GCCAAGTGCTGTACCACTGAGCTAAGTCCCCAGCCCATTACCACATGTTT
GTTTTGGTTTTTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGTTTTTGT
TTTTTTACAGAGAACATTAGTAAGAGTTAGAAGAAAGGAAAAGAACATTC
ATCAATATGGGCTATGTAAATTTGATATCTGTGTGTTTTCCAAAAAGCCT
TTCCTGTCTGCCTTCAGTTAGTAGATCTTTGGGTAGAATGTACATTTATC
TTCCCCCTCCAAAGGTTTCTTTATAGATTACTATTCTCTTCTGATGGGAC
ACAGAGACATCTAGGTTATGATTTCTGGAGGTAGCCATTATAACTCTCAT
CCAAAGCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTATCT
TANCTTANCTTATCTTCNCTTCNCNTCNCTTCTCTTCTCTTCTCTTCTCT
TCNCTTCTCTTCTCTTTTTTTCTTTATATCTACTTCTCTTCTCTCTCTCT
CTCTCTTTCTCTCTCTCTCTCTTCCTATCNGNGTNACGNTGGCATTTTAC
CGGACAACCGTATTGTAAAATCATTGTT

Query= MSMg01no530_p04.g1 MSMg01no530_p04.g1 CHROMAT_FILE:
MSMg01no530_p04.g1 PHD_FILE: MSMg01no530_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:26 2005
         (517 letters)



>mm_chr1_26686507_26687430
          Length = 924

 Score =  679 bits (351), Expect = 0.0
 Identities = 455/523 (86%), Gaps = 56/523 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccttctgtggttcctctgttgctgtccttataagatttatgtacagaacagcttgaat 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttccttctgtggttcctctattgctgtccttataagatttatgtacagaacagcttgaat 307

                                                                       
Query: 61  ctcagatgtcaccacatatttttttttccagagctgaggactgaacccagggccttaagc 120
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 308 ctcagatgtcaccacatatttttttt-ccagagctgagggctgaacccagggccttaagc 366

                                                                       
Query: 121 ttgctagccaagtgctgtaccactgagctaagtccccagcccattaccacatgtttgttt 180
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||        
Sbjct: 367 ttgctagccaagtgctgtaccactgagctaagtccacagcccatcaccacat-------- 418

                                                                       
Query: 181 tggtttttttttgtttgtttgtttttgtttttgtttttgtttttgtttttttacagagaa 240
              |||||||||                                   |||||||||||||
Sbjct: 419 ---ttttttttt-----------------------------------tttttacagagaa 440

                                                                       
Query: 241 cattagtaagagttagaagaaaggaaaagaa----cattcatcaatatgggctatgtaaa 296
           |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 441 cattagtaagagttagaagaaaggaaaagaaggaacattcatcaatatgggctatgtaaa 500

                                                                       
Query: 297 tttgatatctgtgtgttttccaaaaagcctttcctgtctgccttcagttagtagatcttt 356
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tttgatatctgtgtgttttcaaaaaagcctttcctgtctgccttcagtgagtagatcttt 560

                                                                       
Query: 357 gggtagaatgtacatttatcttccccctccaaaggtttctttatagattactattctctt 416
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 561 gggtagaatgtacatttatcttccccctccaaaggtttctttatatattacgattctctt 620

                                                                       
Query: 417 ctgatgggacacagagacatctaggttatgatttct---ggaggtagccattataactct 473
           ||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||
Sbjct: 621 ctgatgggacacagagacatctaggttatgatttcttctggaggtggccattataactct 680

                                                      
Query: 474 catccaaagctcttctcttctcttctcttctcttctcttctct 516
           || ||||||||||||||||||  |||||||||| |||| ||||
Sbjct: 681 caaccaaagctcttctcttct--tctcttctctcctctcctct 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 924
Length adjustment: 10
Effective length of query: 507
Effective length of database: 914
Effective search space:   463398
Effective search space used:   463398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)