Query= MSMg01no530_p12.b1 MSMg01no530_p12.b1 CHROMAT_FILE:
MSMg01no530_p12.b1 PHD_FILE: MSMg01no530_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:27 2005
(710 letters)
>mm_chr1_51509292_51510401
Length = 1110
Score = 1326 bits (686), Expect = 0.0
Identities = 701/706 (99%)
Strand = Plus / Plus
Query: 5 gaattcatctcctgaattgttaaacagcaaaattaaactcattatcttcctacagcttct 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctcctgaaaggttaaacagcaaaattaaactcattatcttcctacagcttct 264
Query: 65 caagccagcaaatcagttccctaagttattttatcttttgttgctatttaattttttctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagccagcaaatcagttccctaagttattttatcttttgttgctatttaattttttctc 324
Query: 125 tcctgtcttgtgggacagtctagcccttccttcctcctccttcttaggttctctctgtgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctgtcttgtgggacagtctagcccttccttcctcctccttcttaggttctctctgtgt 384
Query: 185 ccattttcttcccatttctaccgctcacacctctttatctcaaactgaaatcttgcagcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccattttcttcccatttctaccgctcacacctctttatctcaaactgaaatcttgcagcc 444
Query: 245 gttcagttgtttacctctctagttggcagtgtcaacctgggcgagtggggcctaaaagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttcagttgtttacctctctagttggcagtgtcaacctgggcgagtggggcctaaaagtg 504
Query: 305 aggtggactaaagtctcatgcaatcaccaactttattgagagcctcagaaaatttatact 364
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 aggtgaactaaagtctcatgcaatcgccaactttattgagagcctcagaaaatttatact 564
Query: 365 ttcggggttaagaagactcagacaaacaaggagttcaatcacaaagagaagcggcacatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcggggttaagaagactcagacaaacaaggagttcaatcacaaagagaagcggcacatg 624
Query: 425 gaaaaaccatgttttcttcatagaagcatgcgagtgacaactgctgaaatgaactcctat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaaaaccatgttttcttcatagaagcatgcgagtgacaactgctgaaatgaactcctat 684
Query: 485 atgccacctctgggtgggacatgaaagtccactacaagaacaatttcatgtttttgaaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgccacctctgggtgggacatgaaagtccactacaagaacaatttcatgtttttgaaga 744
Query: 545 aactgaagtcacaagactcttgtcttgttttcttggagttttcttacaagcactcagaat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aactgaagtcacaagactcttgtcttgttttcttggagttttcttacaagcactcagaat 804
Query: 605 cctcacacagctccattcttggactgtgttccaatatcctatgacagatttccttttctt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctcacacagctccattcttggactgtgttccaatatcctatgacagatttccttttctt 864
Query: 665 ttgtctccccttctcctcttttctgtatagtcgctcttgcagtttt 710
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 865 ttgtctccccttctcctcttttctgtatagtcactcttgcagtttt 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space: 770000
Effective search space used: 770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_p12.g1 MSMg01no530_p12.g1 CHROMAT_FILE:
MSMg01no530_p12.g1 PHD_FILE: MSMg01no530_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:28 2005
(603 letters)
>mm_chr1_51589834_51590836
Length = 1003
Score = 924 bits (478), Expect = 0.0
Identities = 499/516 (96%), Gaps = 16/516 (3%)
Strand = Plus / Minus
Query: 1 ctgagtgacaggaaccacacaggaagaaatgttccttttggagtagtttgttacacagca 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctgagtggcaggaaccacacaggaagaaatgttccttttggagtagtttgttacacagca 457
Query: 61 ggagatgactaatgtggaagtattttcctattctagatcttgcaatttttaattgagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggagatgactaatgtggaagtattttcctattctagatcttgcaatttttaattgagtta 397
Query: 121 tcaatgtgaattttatgatttttttttgcattttgttaaaataatactgaattctctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcaatgtgaattttatgatttttttttgcattttgttaaaataatactgaattctctttt 337
Query: 181 attgttagctgtgctacagggaattatcagggtcctcttgatgatgactatcaagtttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 attgttagctgtgctacagggaattatcagggtcctcttgatgatgactatcaagtttga 277
Query: 241 gtctagggaatccttttatattatagggtctttaaacaaatcactttgtggaggttattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtctagggaatccttttatattatagggtctttaaacaaatcactttgtggaggttattt 217
Query: 301 aagggattggaaaaggttt----------------atttatttatttatttagaaatggc 344
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 216 aagggattggaaaaggtttgtttatttatttatttatttatttatttatttagaaatggc 157
Query: 345 aagtgtttcaggatctgtaggtcactgtatctcatacatttcttattttgcaatcctttg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagtgtttcaggatctgtaggtcactgtatctcatacatttcttattttgcaatcctttg 97
Query: 405 aaactatccgtataattctcagctgtatcttactgttgcatgctgtgaagagacactaca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 aaactatccgtataattctcagctgtatcttactgttgcatgctgtgaagagacactaca 37
Query: 465 accaaggcaacgctcatgaaagaaagtattcagttg 500
||||||||||||||||||||||||||||||||||||
Sbjct: 36 accaaggcaacgctcatgaaagaaagtattcagttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
