CCCTGAANCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAGGCTCTTAAATAAACATAGTAAAAGCAATATACA
ACAAACCAGCAGCCAACATCAAACTAAATGGAGAGAAACTTGAAGCAATC
TCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTCTCCCTACCTATA
CAATATAGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGATA
TCAAAGGGATACAAATTGAAAAGGACGAAGTCAAAATATCACTATTTGCA
GATGATGTGATAGTATATATAAGTGACCACAAAAATTCCACCAGAGTACT
CCTAAACCTGATTAAAAAAAAAAAAACTTTCGGAAAGTAGTTGGTTATAA
AATTAACTTAAACAAATCAGTGGCCTTTCTCTACACAAATGATAAACAGA
CTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTCACAAATAAC
ATTAAATACCTTGGTGTGTCTCTAAGGAAGTGAAAAATCTGTATAAGAAC
TTCAAGTCTCTGAAGAAAGAAATTGAAGAAGACTTCAGAAGATAAAAAGA
TCTCCCATGCTCATGAATTGGCAGGATTAATATAATCAAAATGGCCATCT
CACCAAGAGCAATCTACAGATTCAATGCAATTGCCATCAAAATTCCAACT
CAATTCTTCACCGAGTTAGAAAGGGCAATTTGCAAGTTCATCTGGAATAA
CAAAAAAAATCAAGGA

NTTTTTTCCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCCTAGCAACCAC
ATGGTGACTCACAACCATCCATAATGAGATCTGACGTCCTCTTCTGGTGC
ATCTGAAGATAGCTACAGTGTACTTAGATATAATAATAAATAAATCTTAA
AAAAGAATGTTTCTGTATAGTAAGAGGATGCAGCAAGCTTTCAGAGTAGA
TTGAAGCATTTTCATTGCTATATAATTATCAATAATGAAAGTCATGTGCT
CATGATAGGGTAAGGTTGATCTAAATTATATTGTTTTGGTTTCCAATGTG
GTCTACCTCAGTATAAAACCTTCAACTTTGAGTATTCAGGTTTAGTACAA
TTTTGCTTACATTTTCTTAAAACATCTTTTAAATTCTTAGTGAAAGTTCT
TGTGGTAACTCTTGCATTTGACCCAAACCATATTGTTATTTTTTTTTCCT
AGTGGTAACTTCTCCCAGTACAAATTCTCCAATTATACCTCCTATTTAAT
AATTTCCTGCTTATACTTAAAAATTCTTAAATTCCTGGTGATTTTTTAAA
GATACCCTCTAAATTCTCACAGTGTCTACTTATTCATCATTTGGTCCATT
TAATAGCACAGAGAGACTGAATATATTTGCAGCCATTACATTTGTCAGAT
TCAGTAACTCTATTTTATTTGCTAACCCCACACATGAAGAGGAATGTGAA
CTTAGAAAAGTTATACCG

Query= MSMg01no531_d23.g1 MSMg01no531_d23.g1 CHROMAT_FILE:
MSMg01no531_d23.g1 PHD_FILE: MSMg01no531_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:49 2005
         (613 letters)



>mm_chr1_196902606_196903618
          Length = 1013

 Score = 1154 bits (597), Expect = 0.0
 Identities = 609/613 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatcctagcaaccacatggtgactcacaaccatccataatgagatctgacgtcctcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 aaatcctagcaaccacatggtgactcacaaccatccataatgagatctgacgtcctcttc 877

                                                                       
Query: 61  tggtgcatctgaagatagctacagtgtacttagatataataataaataaatcttaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tggtgcatctgaagatagctacagtgtacttagatataataataaataaatcttaaaaaa 817

                                                                       
Query: 121 gaatgtttctgtatagtaagaggatgcagcaagctttcagagtagattgaagcattttca 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 816 gaatgtttctgtatagtaagaggatgcagcaagctttcagagtaaattgaagcattttca 757

                                                                       
Query: 181 ttgctatataattatcaataatgaaagtcatgtgctcatgatagggtaaggttgatctaa 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 756 ttgctatataattatcaataatgaaagtcatgtgctcacgatagggtaaggttgatctaa 697

                                                                       
Query: 241 attatattgttttggtttccaatgtggtctacctcagtataaaaccttcaactttgagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 attatattgttttggtttccaatgtggtctacctcagtataaaaccttcaactttgagta 637

                                                                       
Query: 301 ttcaggtttagtacaattttgcttacattttcttaaaacatcttttaaattcttagtgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttcaggtttagtacaattttgcttacattttcttaaaacatcttttaaattcttagtgaa 577

                                                                       
Query: 361 agttcttgtggtaactcttgcatttgacccaaaccatattgttatttttttttcctagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agttcttgtggtaactcttgcatttgacccaaaccatattgttatttttttttcctagtg 517

                                                                       
Query: 421 gtaacttctcccagtacaaattctccaattatacctcctatttaataatttcctgcttat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 516 gtaacttctcccagtacaaattctccaattatacctcctatttaataatttcatgcttat 457

                                                                       
Query: 481 acttaaaaattcttaaattcctggtgattttttaaagataccctctaaattctcacagtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acttaaaaattcttaaattcctggtgattttttaaagataccctctaaattctcacagtg 397

                                                                       
Query: 541 tctacttattcatcatttggtccatttaatagcacagagagactgaatatatttgcagcc 600
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 396 tctacttattcatcatttggtccatttaatagcacagaaagactgaatatatttgcagcc 337

                        
Query: 601 attacatttgtca 613
           |||||||||||||
Sbjct: 336 attacatttgtca 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)